SWISS-MODEL Repository - Model Details

Model Overview
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1
513

Sequence
UniProt B0BK71
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Dyp_perox

Model 3D Structure
Model information:
Modelled residue range: 61 to 512
Based on template: [ 2d3q ]  
Sequence Identity [%]: 49%
Model date: 2008-07-17
Revision date: 2008-07-17

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-07-17. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    61       GLNLTDI QGDILIGMKK NKELFFFFSI TDAATFKAKL GSDILELITS
2d3qA     4     t--ilplnni qgdilvgmkk qkerfvffqv ndatsfktal ktyvperits
                                                                      
TARGET                       hhh      ssssssssss s hhhhhhhh hhhhhh    
2d3qA                        hhh      ssssssssss s hhhhhhhh hhhhhh    


TARGET    108   TNQLLAV-AT QPITAVNVAF SSTGLKALGI TDDLKDPVFE AGMLSNAVSD
2d3qA     52    aailisdpsq qplafvnlgf sntglqalgi tddlgdaqfp dgqfadaa-n
                                                                      
TARGET          hhhh           ssssss shhhhhhh          hhh           
2d3qA           hhhhh          ssssss shhhhhhh          hhh       hh h


TARGET    157   LSDPGTGNWV PGFVGTSVHG VFLLASDTID NVNTELANIQ TILNGSITEI
2d3qA     101   lgdd-lsqwv apftgttihg vfligsdqdd fldqftddis stfgssitqv
                                                                      
TARGET                             ss ssssss  hh hhhhhhhhh       sssss
2d3qA           h                  ss ssssss  hh hhhhhhhhh       sssss


TARGET    207   HRLQGEARPG DQQGHEHFGF MDGISNPAVD GFTPPAEIRP GQALIPPGIM
2d3qA     150   qalsgsarpg dqaghehfgf ldgisqpsvt gwettv--fp gqavvppgii
                                                                      
TARGET          sssssss       sss   s ss     sss              sss  hhh
2d3qA           sssssss       sss   s ss     sss              sss  hhh


TARGET    257   LLGEANDTFQ NDRPPWAKDG SFLVFRQMQQ RAPEFNKFLQ DHALNM---P
2d3qA     198   ltgrdgdt-- gtrpswaldg sfmafrhfqq kvpefnaytl anaipansag
                                                                      
TARGET                                ssssssssss shhhhhhhhh h         
2d3qA                                 ssssssssss shhhhhhhhh h   sss  s


TARGET    304   NMTSEQGADL LGARIVGRWK SDAPIDLTPL VDDPVLAADN QRNNNFDFSD
2d3qA     246   nltqqegaef lgarmfgrwk sgapidlapt addpalgadp qrnnnfdysd
                                                                      
TARGET             hhhhhhh hhhhhh                   hhhhh             
2d3qA           ss hhhhhhh hhhhhh                   hhhhh             


TARGET    354   AT-NQTRCPF SAHIRKANPR GDLGGINKFP NQHIIRAGIP YGPEVTDAEK
2d3qA     296   tltdetrcpf gahvrktnpr qdlggpv--d tfhamrssip ygpetsdael
                                                                      
TARGET                       hhhhh                   ssssss s     hhhh
2d3qA                        hhhhh                   ssssss s     hhhh


TARGET    403   ASNSSSTDPS LERGLAFVAY QSNIQNGFVF LQKNWVDNTN ---FFRPGTG
2d3qA     344   asg----vta qdrgllfvey qsiigngfrf qqinwannan fpfskpitpg
                                                                      
TARGET                       ssssssss s      hhh hhhhhh   s    ss ssss
2d3qA                        ssssssss s      hhh hhhhhh             ss


TARGET    450   VDPLIGTNSR NSGTDAPNTP RVVSGLDPNN ATSTIEIGID FVVSRGGEYF
2d3qA     390   iepiigqt-- --------tp rtvggldpln qnetftv-pl fvipkggeyf
                                                                      
TARGET          s       ss s    sss   ssss           sss    ssssssssss
2d3qA           s                     ssss           sss    ssssssssss


TARGET    500   FSPSLSAIRT VLS                                        
2d3qA     429   flpsisalta tiaa                                       
                                                                      
TARGET          ss  hhhhhh                                            
2d3qA           ss  hhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 87cd8d3bc280ca9d065e293b6ad76363 on BC2-cluster at Thu Jul 17 16:18:02 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>87cd8d3bc280ca9d065e293b6ad76363
**************************************************************************************
>2d3qA Evalue:0 SeqID:49.130 Method:HHSEARCH Type:MODEL
----------******************************************************************--********


TEMPLATE ID    START          STOP           METHOD         STATUS         
2d3qA          61             512            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 87cd8d3bc280ca9d065e293b6ad76363 on gopt-80.cluster.bc2.ch BC2-Cluster at
Thu Jul 17 16:22:11 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.