SWISS-MODEL Repository - Model Details

Model Overview
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1
120

Sequence
UniProt B0JN62
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Ribonuclease_P

Model 3D Structure
Model information:
Modelled residue range: 1 to 119
Based on template: [ 1d6t ]  
Sequence Identity [%]: 26%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1       MGLPQIHR LKHRQDFQAV YGTGKRYHGS HLTLISLEDS CPDAPGPSRF
1d6tA     1       mllekayr ikknadfqri ykkghsvanr qfvvytcnn- --keidhfrl
                                                                      
TARGET                         hhhhhh h   sss    ssssss               
1d6tA                          hhhhhh hh  sss    ssssss               


TARGET    49    GISISKKVSK KAVVRNRLKR QIRAVIRELL PEIAAGWRGI IIIRPGAIEC
1d6tA     46    gisvskkl-g navlrnkikr airenfkvhk shil-akdii viarqpakdm
                                                                      
TARGET                      hh   hhhh hhhhhhhhh           s ssss  hh  
1d6tA                       hh   hhhh h   hhh             s ssss  hh  


TARGET    99    NYEHFLRELK QLLVKANIIH G --                            
1d6tA     94    ttlqiqnsle hvlkiakvfn kkik                            
                                                                      
TARGET           hhhhhhh    hhhhh                                     
1d6tA            hhhh       hhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: b01ced53d0d5fa27e400f6d234645060 on BC2-cluster at Sun Aug 31 17:53:46 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>b01ced53d0d5fa27e400f6d234645060
************************************************************
>1d6tA Evalue:2.7E-28 SeqID:26.891 Method:HHSEARCH Type:MODEL
*******************-****************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1d6tA          1              119            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: b01ced53d0d5fa27e400f6d234645060 on gopt-46.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 17:57:57 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.