SWISS-MODEL Repository - Model Details

Model Overview
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1
448

Sequence
UniProt B0R7Q6
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Beta_elim_lyase

Model 3D Structure
Model information:
Modelled residue range: 3 to 447
Based on template: [ 1ax4 ]  
Sequence Identity [%]: 41%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    3             SH TATMVDRIED TSRADREAAL ADAGHNVFEL ASDDVAVDLL
1ax4A     2     akrive--pf rikmvekirv psreereaal keagynpfll pssavyidll
                                                                      
TARGET                                  hhhhhhhh hh                   
1ax4A                                   hhhhhhhh hhh                  


TARGET    45    TDSGTGTMSN DQWAAMLQGD EAYAGSASFE DLAVAAEDVM GFQHIIPAHQ
1ax4A     50    tdsgtnamsd hqwaamitgd eayagsrnyy dlkdkakelf nydyiipahq
                                                                      
TARGET                   h hhhhhh            hhh hhhhhhhhhh   sssssss 
1ax4A                    h hhhhhhhh          hhh hhhhhhhhhh   sssssss 


TARGET    95    GRGAENVLYG AVLSAG---- ----DTVLNN AHFDTTRAHV AANDATPVDC
1ax4A     100   grgaenilfp vllkykqkeg kaknpvfisn fhfdttaahv elngckaini
                                                                      
TARGET          hhhhhhhhhh hhh             sssss    hhhhhhh hh       s
1ax4A           hhhhhhhhhh hhhhhhhh       sssss     hhhhhhh hh   sssss


TARGET    137   PVDGARDPDT DAPFKGNFSV ERARRVVDDV GADAVPVVVL TITNNSMAGQ
1ax4A     150   vtekafdset yddwkgdfdi kklkeniaqh gadnivaivs tvtcnsaggq
                                                                      
TARGET          ss hh            sssh hhhhhhhhhh     ssssss ss        
1ax4A           ss hh            sssh hhhhhhhhhh        sss ss        


TARGET    187   PVSIENTREV AAFADDIDAT FVIDACRFAE NAHFVQQREP GYEHDSVAAI
1ax4A     200   pvsmsnlkev yeiakqhgif vvmdsarfce nayfikardp kyknatikev
                                                                      
TARGET             hhhhhhh hhhhhhh  s sssss  hhh hhhhhhh          hhhh
1ax4A              hhhhhhh hhhhhhh  s sssss  hhh hhhhhhh          hhhh


TARGET    237   AREQLSYADA CVMSGKKDGL VNVGGFVGLH DDGRLHEQCR QRGILYEGFS
1ax4A     250   ifdmykyada ltmsakd-pl lnigglvair dneeiftlar qrcvpmegfv
                                                                      
TARGET          hhhhh   ss sssss         sssssss   hhhhhhhh hhhhhh    
1ax4A           hhhhh   ss sssss         sssssss   hhhhhhhh hhhhhh    


TARGET    287   TYGGMSGRDM AAFAVGLREA VEPPYVAERV AQVQRLADAL TDRDVPIYQP
1ax4A     300   tygglagrdm aamvqgleeg teeeylhyri gqvkylgdrl reagipiqyp
                                                                      
TARGET                 hhh hhhhhhhhhh    hhhhhhh hhhhhhhhhh hhh  sss  
1ax4A                 hhhh hhhhhhhhhh    hhhhhhh hhhhhhhhhh hhh  sss  


TARGET    337   AGGHAVYIDA NAALPHLPRE QFPGQAFVCE LYREGGVRAV ELGRFAFP--
1ax4A     350   tgghavfvdc kklvpqipgd qfpaqavina lylesgvrav eigsfllgrd
                                                                      
TARGET             sssssss hhh          hhhhhhhh hhhh     s ss        
1ax4A              sssssss hhh          hhhhhhhh hhhh     s ss hhhh   


TARGET    385   ------DTDR RDLVRLALPR RTYGPDHLDH VADTAAAVCE RGTDVTGLEI
1ax4A     400   patgeqkhad mefmrltiar rvytndhmdy iadaliglke kfatlkglef
                                                                      
TARGET                      sssssss       hhhhhh hhhhh   hh hhh   ssss
1ax4A                       sssssss       hhhhhh hhhhh   hh hhh   ssss


TARGET    429   VSEPELTELR HFSAALQPV                                  
1ax4A     450   eyeppv--lr hftarlkpi-                                 
                                                                      
TARGET          s              sssss                                  
1ax4A           s        h hhh sssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 5452407b024255664385c310f817136f on BC2-cluster at Mon Sep  1 03:59:18 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>5452407b024255664385c310f817136f
***************************************************************************
>1ax4A Evalue:0 SeqID:41.866 Method:HHSEARCH Type:MODEL
***************************************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1ax4A          3              447            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 5452407b024255664385c310f817136f on gopt-80.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 04:03:10 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.