SWISS-MODEL Repository - Model Details

Model Overview
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Sequence
UniProt O02365
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
O02365: 6239.W10G6.3.1

Domain
Link to: [ InterPro ]
Filament
LTD

Model 3D Structure
Model information:
Modelled residue range: 70 to 106
Based on template: [ 1gk7 ]  
Sequence Identity [%]: 59%
Model date: 2013-05-06
Revision date: 2013-04-01

Quaternary structure information: [details]
Template (1gk7): MONOMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: SO4: 1.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment

TARGET    1         REKKEI MELNDRLASY IEKVRFLDAQ NRKLDADLKM L         
1gk7A     100   gs--nekvel qelndrfany idkvrfleqq nkillaeleq l-        
                                                                      
TARGET               hhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhh              
1gk7A            h  hhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhh            



Quality


Template's ligands section
Ligands in the template: SO4: 1.
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page.
No ligands were included in the model.


Quaternary Structure Annotation of the Template
1gk7 is annotated as MONOMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 1gk7.pdb1.gz

Quaternary Structure Modelling of the Target Protein
The target and template sequences are too diverse (seqid: 59.459) to infer a conservation of the oligomeric state
Please use the advancend features of the SwissModel Project Mode

The target structure was calculated as SINGLE CHAIN


Template Selection
 - Start SMR-Pipeline for:ae864c3ce2410932df85fa42078ae0dd on BC2-cluster at Mon May  6 15:51:16
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - No template with A found
 - No template with B found
 - No template with D found
 - No template with B found
 - No template with D found
 - No template with D found
 - No template with B found
 - No template with D found
 - No template with B found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:8): model based on new templates
 - Send 8 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -           *****
 - building model based on 1gk7A (70-106) was successful 
 -                                                                ***************
 - building model based on 3umnB (460-568) was successful 
 -           ************
 - building model based on 3s4rA (71-160) was successful 
 -                                                   *******
 - building model based on 2xv5B (366-419) was successful 
 -                                                ****
 - building model based on 2w4uA (338-364) was successful 
 -                                               ************
 - building model based on 3tnuA (331-419) was successful 
 -                 ********************
 - building model based on 3uf1B (115-261) was successful 
 -          ***********************************************
 - building model based on 1ciiA (64-405) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:ae864c3ce2410932df85fa42078ae0dd on BC2-cluster at Mon May  6 16:06:42
2013 




Template Description
Match Chain SeqId

1gk7: HUMAN VIMENTIN COIL 1A FRAGMENT (1A)
Solved by: X-RAY, Resolution: 1.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

70-106 1gk7A 59%
[Model]

3g1e: X-RAY CRYSTAL STRUCTURE OF COIL 1A OF HUMAN VIMENTIN
Solved by: X-RAY, Resolution: 1.83A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

71-106 3g1eB 58%
[Model]
71-106 3g1eA 58%
[Model]

3s4r: CRYSTAL STRUCTURE OF VIMENTIN COIL1A/1B FRAGMENT WITH A STMUTATION
Solved by: X-RAY, Resolution: 2.45A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

67-160 3s4rB 37%
[Model]
71-160 3s4rA 38%
[Model]

3umn: CRYSTAL STRUCTURE OF LAMIN-B1
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

458-575 3umnA 36%
[Model]
459-574 3umnB 37%
[Model]
458-575 3umnC 36%
[Model]

3jt0: CRYSTAL STRUCTURE OF THE C-TERMINAL FRAGMENT (426-558) LAMIN-B1 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICSCONSORTIUM TARGET HR5546A
Solved by: X-RAY, Resolution: 2.39A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

466-572 3jt0A 37%
[Model]
465-571 3jt0B 38%
[Model]

2lll: SOLUTION NMR STRUCTURE OF C-TERMINAL GLOBULAR DOMAIN OF HUB2, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR854
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

464-580 2lllA 37%
[Model]

2xv5: HUMAN LAMIN A COIL 2B FRAGMENT
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

366-419 2xv5A 33%
[Model]
366-419 2xv5B 33%
[Model]

2kpw: NMR SOLUTION STRUCTURE OF LAMIN-B1 PROTEIN FROM HOMO SAPIENS: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM MEGA TARGET, HR5546A (439-549)
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

456-576 2kpwA 33%
[Model]

1ifr: STRUCTURE OF LAMIN A/C GLOBULAR DOMAIN
Solved by: X-RAY, Resolution: 1.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

462-572 1ifrA 33%
[Model]

3v4w: STRUCTURE OF E347K MUTANT OF LAMIN
Solved by: X-RAY, Resolution: 3.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

351-423 3v4wA 33%
[Model]

3gef: CRYSTAL STRUCTURE OF THE R482W MUTANT OF LAMIN A/C
Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

464-579 3gefA 33%
[Model]
464-579 3gefB 33%
[Model]
464-579 3gefC 33%
[Model]
464-579 3gefD 33%
[Model]

1x8y: HUMAN LAMIN COIL 2B
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

351-423 1x8yA 32%
[Model]

3v5b: STRUCTURE OF COIL 2B OF HUMAN LAMIN
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

351-423 3v5bA 32%
[Model]

3v4q: STRUCTURE OF R335W MUTANT OF HUMAN LAMIN
Solved by: X-RAY, Resolution: 3.06A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

351-423 3v4qA 32%
[Model]

1ivt: NMR STRUCTURES OF THE C-TERMINAL GLOBULAR DOMAIN OF HUMAN LAMIN A/C
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

458-577 1ivtA 32%
[Model]

1gk4: HUMAN VIMENTIN COIL 2B FRAGMENT (CYS2)
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

342-419 1gk4B 28%
[Model]
342-419 1gk4A 28%
[Model]
344-420 1gk4D 29%
[Model]
350-419 1gk4C 30%
[Model]
346-419 1gk4F 30%
[Model]
350-419 1gk4E 30%
[Model]

1ufg: SOLUTION STRUCTURE OF IMMUNOGLOBULIN LIKE DOMAIN OF MOUSE NUCLEAR LAMIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

442-580 1ufgA 29%
[Model]

1gk6: HUMAN VIMENTIN COIL 2B FRAGMENT LINKED TO GCN4 LEUCINE ZIPPER (Z2B)
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

369-422 1gk6A 28%
[Model]
369-419 1gk6B 29%
[Model]

3tyy: CRYSTAL STRUCTURE OF HUMAN LAMIN-B1 COIL 2 SEGMENT
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

348-421 3tyyA 27%
[Model]
350-419 3tyyB 29%
[Model]

3tnu: HETEROCOMPLEX OF COIL 2B DOMAINS OF HUMAN INTERMEDIATE FILPROTEINS, KERATIN 5 (KRT5) AND KERATIN 14 (KRT14)
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

326-419 3tnuB 26%
[Model]
331-419 3tnuA 27%
[Model]

2w4u: ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLFROZEN AFTER A LENGTH STEP
Solved by: X-RAY, Resolution: 35.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

91-106 2w4uA 25%
[Model]
381-396 2w4uA 13%
[Model]
377-396 2w4uA 20%
[Model]
372-398 2w4uV 19%
[Model]
372-398 2w4uU 19%
[Model]
372-398 2w4uB 19%
[Model]
380-396 2w4uV 12%
[Model]
380-396 2w4uU 12%
[Model]
380-396 2w4uB 12%
[Model]
381-392 2w4uA 25%
[Model]
338-364 2w4uA 33%
[Model]
379-396 2w4uV 28%
[Model]
379-396 2w4uU 28%
[Model]
379-396 2w4uB 28%
[Model]
330-364 2w4uV 31%
[Model]
330-364 2w4uU 31%
[Model]
330-364 2w4uB 31%
[Model]
95-106 2w4uA 25%
[Model]
203-209 2w4uV 14%
[Model]
203-209 2w4uU 14%
[Model]
203-209 2w4uB 14%
[Model]
76-107 2w4uA 28%
[Model]
201-215 2w4uV 27%
[Model]
201-215 2w4uU 27%
[Model]
201-215 2w4uB 27%
[Model]

2w49: ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCL
Solved by: X-RAY, Resolution: 35.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

372-398 2w49V 19%
[Model]
372-398 2w49U 19%
[Model]
372-398 2w49B 19%
[Model]
372-398 2w49A 19%
[Model]
380-396 2w49V 12%
[Model]
380-396 2w49U 12%
[Model]
380-396 2w49B 12%
[Model]
380-396 2w49A 12%
[Model]
379-396 2w49V 28%
[Model]
379-396 2w49U 28%
[Model]
379-396 2w49B 28%
[Model]
379-396 2w49A 28%
[Model]
330-364 2w49V 31%
[Model]
330-364 2w49U 31%
[Model]
330-364 2w49B 31%
[Model]
330-364 2w49A 31%
[Model]
203-209 2w49V 14%
[Model]
203-209 2w49U 14%
[Model]
203-209 2w49B 14%
[Model]
203-209 2w49A 14%
[Model]
201-215 2w49V 27%
[Model]
201-215 2w49U 27%
[Model]
201-215 2w49B 27%
[Model]
201-215 2w49A 27%
[Model]

3uf1: CRYSTAL STRUCTURE OF VIMENTIN (FRAGMENT 144-251) FROM HOMONORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR4796B
Solved by: X-RAY, Resolution: 2.81A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

117-261 3uf1A 26%
[Model]
113-260 3uf1D 23%
[Model]
113-259 3uf1C 22%
[Model]
115-261 3uf1B 25%
[Model]

1c1g: CRYSTAL STRUCTURE OF TROPOMYOSIN AT 7 ANGSTROMS RESOLUTIONIN THE SPERMINE-INDUCED CRYSTAL FORM
Solved by: X-RAY, Resolution: 7.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

124-194 1c1gB 15%
[Model]
124-194 1c1gA 15%
[Model]
150-210 1c1gB 18%
[Model]
150-210 1c1gA 18%
[Model]
145-219 1c1gB 16%
[Model]
145-219 1c1gA 16%
[Model]
138-223 1c1gB 10%
[Model]
138-223 1c1gA 10%
[Model]
148-213 1c1gB 15%
[Model]
148-213 1c1gA 15%
[Model]
170-221 1c1gB 25%
[Model]
170-221 1c1gA 25%
[Model]
328-365 1c1gB 32%
[Model]
328-365 1c1gA 32%
[Model]
124-194 1c1gC 15%
[Model]
124-194 1c1gD 15%
[Model]
150-210 1c1gC 18%
[Model]
150-210 1c1gD 18%
[Model]
145-219 1c1gC 16%
[Model]
145-219 1c1gD 16%
[Model]
138-223 1c1gC 10%
[Model]
138-223 1c1gD 10%
[Model]
148-213 1c1gC 15%
[Model]
148-213 1c1gD 15%
[Model]
170-221 1c1gC 25%
[Model]
170-221 1c1gD 25%
[Model]
328-365 1c1gC 32%
[Model]
328-365 1c1gD 32%
[Model]
73-95 1c1gC 13%
[Model]
73-95 1c1gB 13%
[Model]
73-95 1c1gA 13%
[Model]
73-95 1c1gD 13%
[Model]
381-396 1c1gC 13%
[Model]
381-396 1c1gB 13%
[Model]
381-396 1c1gA 13%
[Model]
381-396 1c1gD 13%
[Model]
375-397 1c1gC 17%
[Model]
375-397 1c1gB 17%
[Model]
375-397 1c1gA 17%
[Model]
375-397 1c1gD 17%
[Model]
377-397 1c1gC 24%
[Model]
377-397 1c1gB 24%
[Model]
377-397 1c1gA 24%
[Model]
377-397 1c1gD 24%
[Model]
91-101 1c1gC 9%
[Model]
91-101 1c1gB 9%
[Model]
91-101 1c1gA 9%
[Model]
91-101 1c1gD 9%
[Model]
85-107 1c1gC 17%
[Model]
85-107 1c1gB 17%
[Model]
85-107 1c1gA 17%
[Model]
85-107 1c1gD 17%
[Model]

3swk: CRYSTAL STRUCTURE OF VIMENTIN COIL1B FRAGMENT
Solved by: X-RAY, Resolution: 1.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

124-251 3swkA 22%
[Model]
124-250 3swkB 21%
[Model]
92-157 3swkB 14%
[Model]

4a7h: STRUCTURE OF THE ACTIN-TROPOMYOSIN-MYOSIN COMPLEX (RIGOR A
Solved by: X-RAY, Resolution: 8.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

110-244 4a7hH 13%
[Model]
110-244 4a7hB 13%
[Model]

4a7l: STRUCTURE OF THE ACTIN-TROPOMYOSIN-MYOSIN COMPLEX (RIGOR A
Solved by: X-RAY, Resolution: 8.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

110-244 4a7lB 13%
[Model]
110-244 4a7lH 13%
[Model]

4a7f: STRUCTURE OF THE ACTIN-TROPOMYOSIN-MYOSIN COMPLEX (RIGOR A
Solved by: X-RAY, Resolution: 8.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

110-244 4a7fH 13%
[Model]
110-244 4a7fB 13%
[Model]

1cii: COLICIN IA
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

329-418 1ciiA 12%
[Model]
493-498 1ciiA 17%
[Model]
522-530 1ciiA 11%
[Model]
149-155 1ciiA 29%
[Model]
64-405 1ciiA 11%
[Model]

2b5u: CRYSTAL STRUCTURE OF COLICIN E3 V206C MUTANT IN COMPLEX WITH ITS IMMUNITY PROTEIN
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

138-375 2b5uA 9%
[Model]
80-238 2b5uA 6%
[Model]
138-375 2b5uC 9%
[Model]
80-238 2b5uC 6%
[Model]
2-20 2b5uC 26%
[Model]
2-20 2b5uA 26%
[Model]
68-76 2b5uC 11%
[Model]
68-76 2b5uA 11%
[Model]

1jch: CRYSTAL STRUCTURE OF COLICIN E3 IN COMPLEX WITH ITS IMMUNITY PROTEIN
Solved by: X-RAY, Resolution: 3.02A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

108-271 1jchC 10%
[Model]
108-271 1jchA 10%
[Model]
126-375 1jchC 7%
[Model]
126-375 1jchA 7%
[Model]
3-11 1jchC 33%
[Model]
3-11 1jchA 33%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.