SWISS-MODEL Repository

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SWISS-MODEL Repository - Model Details

Model Overview

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340

Sequence

UniProt

O04348

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING

O04348: 3702.AT2G30440.1

Domain

Link to: [ InterPro ]

Peptidase_S26

Model 3D Structure

	Model information:
	Modelled residue range:	172 to 322
	Based on template:	[ 1b12 ]
	Sequence Identity [%]:	23%
	Model date:	2012-10-31
	Revision date:	2012-10-15

Quaternary structure information:	[details]
Template (1b12): MONOMER Model built: SINGLE CHAIN

Ligand information:	[details]
Ligands in the template: 1PN: 1, PO4: 1. Ligands in the model: none.

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2012-10-15. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]

Alignment


TARGET    1       SALAEPKS IPSTSMYPTL DKGDRVMAEK VSYFFRKPEV SDIVIFKAPP
1b12C     78      sfiyepfq ipsgsmmptl ligdfilvek fat--ghpkr gdivvfkype
                                                                      
TARGET            sssss                   ssssss s           sssssssss
1b12C             sssss                 ssssssss s           sssssss  


TARGET    49    ILLEYPEYGY SSNDVFIKRI VASEGDWVEV RDGKLF---- ----------
1b12C     138   ---------- dpkldyikra vglpgdkvty dpvskeltiq pgcssgqace
                                                                      
TARGET          s       ss ss sssssss s    sssss                      
1b12C                         sssssss s    sssss s    sssss           


TARGET    85    -----VNDIV QEEDF----- ---------- ---------- ----------
1b12C     178   nalpvtysnv epsdfvqtfs atsgffevpk netkengirl serketlgdv
                                                                      
TARGET                                                                
1b12C                sss   ssssssssss  sssssss          sss sssssss  s


TARGET    95    ---------- ------VLEP MSYEMEPMFV PKGYVFVLGD NRNKSFDSHN
1b12C     234   thriltvpia qdqvgmyyqq pgqqlatwiv ppgqyfmmgd nrdnsadsry
                                                                      
TARGET                                     sssss   ssssss             
1b12C           ssssss                     sssss   ssssss             


TARGET    129   WGPLPIENIV GRSVFRYWPP SKV ------ ----------           
1b12C     284   wgfvpeanlv grataiwmsf dkqegewptg lrlsriggih           
                                                                      
TARGET             sss sss sssssss                                    
1b12C              sss sss ssssssssss s        s ss    sss

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Ligands in the template: 1PN: 1, PO4: 1. 
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page. 
No ligands were included in the model.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template 
 1b12 is annotated as MONOMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 1b12.pdb3.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 Analysis of evolutionary and family specific aspects revealed non-conservation of the oligomeric structure 
 Hence, the oligomeric structures of the target and the template cannot be assumed to be similar (=MONOMER) 
 The target structure was calculated as SINGLE CHAIN 
 The corresponding reliability score is 0.372 (>0.5 indicates similarity)

Template Selection

 - Start SMR-Pipeline for:21576de30a8b6f6762420a45f2f1f62d on BC2-cluster at Wed Oct 31 14:44:54
2012 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - Proof template(s) selection compared to previous Repository update
 - Need for modeling since selected templates are the not the same as in previous update

 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                         ************************************
 - building model based on 1b12C (172-322) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:21576de30a8b6f6762420a45f2f1f62d on BC2-cluster at Wed Oct 31 14:46:24
2012

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

3iiq: CRYSTALLOGRAPHIC ANALYSIS OF BACTERIAL SIGNAL PEPTIDASE INTERNARY COMPLEX WITH ARYLOMYCIN A2 AND A BETA-SULTAM INHIBITOR
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	173-324	3iiqA	23%	>target ALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFV-------------------------------LE----------------------P------------MSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKVSD--------------- >3iiqA FIYEPFQIPSGSMMPTLLIGDFILVEKF-----HPKRGDIVVFKYPE----------DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSACENALPVTYSNVEPSDFVQTFSSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH [Model]
	174-336	3iiqB	21%	>target LAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVL-----------------------------------------------------------EP------------MSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKVSDT-IYHDQAITRGP-- >3iiqB IYEPFQIPSGSMMPTLLIGDFILVEKFTG---HPKRGDIVVFKYPE----------DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGCENALPVTYSNVEPSDFVQTFSRRNATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH [Model]

1kn9: CRYSTAL STRUCTURE OF A BACTERIAL SIGNAL PEPTIDASE APO- ENZYME, IMPLICATIONS FOR SIGNAL PEPTIDE BINDING AND THE SER-LYS DYAD MECHANISM.
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

170-325	1kn9A	21%	>target FRSALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFR------------KPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRD--GKLFVNDIVQEEDFVL---------------------------------------------------------------------EPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPP----SKVSDT- >1kn9A VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPE----------DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSNALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDLRLSRIGGIH [Model]
172-321	1kn9B	21%	>target SALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLF--VNDIVQEEDFVLE--------------------------------------------------------------P------------MSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSK---------- >1kn9B SFIYEPFQIPSGSMMPTLLIGDFILVEKFAH----PKRGDIVVFKYPE----------DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDGLRLSRIGGIH [Model]
170-325	1kn9C	21%	>target FRSALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFR------------KPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRD--GKLFVNDIVQEEDFVL---------------------------------------------------------------------EPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPP----SKVSDT- >1kn9C VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPE----------DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSNALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDLRLSRIGGIH [Model]
172-321	1kn9D	22%	>target SALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLF--VNDIVQEED---------------FV------------------------------------------LEP------------MSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSK---------- >1kn9D SFIYEPFQIPSGSMMPTLLIGDFILVEKF------PKRGDIVVFKYED-----------PKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQANALPVTYSNVEPSDFVQTFSRREATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDGLRLSRIGGIH [Model]

1b12: CRYSTAL STRUCTURE OF TYPE 1 SIGNAL PEPTIDASE FROM ESCHERICHIA COLI IN COMPLEX WITH A BETA-LACTAM INHIBITOR
Solved by: X-RAY, Resolution: 1.95A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

171-321	1b12A	21%	>target RSALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFR------------KPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVND--IVQEEDFVLE--------------------------------------------------------------------------PMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSK---------- >1b12A RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPE----------DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDGLRLSRIGGIH [Model]
173-325	1b12B	22%	>target ALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVR--DGKLFVNDIVQEEDFVLE-----------------------------------------------------P------------MSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPP----SKVSDT- >1b12B FIYEPFQIPSGSMMPTLLIGDFILVEKFGH----PKRGDIVVFKYPE----------DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCCENALPVTYSNVEPSDFVQTFSREATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDLRLSRIGGIH [Model]
171-321	1b12D	23%	>target RSALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFR------------KPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEED-F------------------------V----------------------LEP------------MSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSK---------- >1b12D RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPE----------DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPALPVTYSNVEPSDFVQTFSTSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDGLRLSRIGGIH [Model]
172-322	1b12C	23%	>target SALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEE-------------------DFVL---------------------------------------------------EPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKV----------------- >1b12C SFIYEPFQIPSGSMMPTLLIGDFILVEKFAT--GHPKRGDIVVFKYPE----------DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH [Model]

3s04: CRYSTAL STRUCTURE OF ESCHERICHIA COLI TYPE I SIGNAL PEPTIDCOMPLEX WITH AN ARYLOMYCIN LIPOGLYCOPEPTIDE ANTIBIOTIC
Solved by: X-RAY, Resolution: 2.44A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	173-325	3s04A	22%	>target ALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFV--NDIVQEED--------------FVL-------------------------------------------------EPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWP----PSKVSDT- >3s04A FIYEPFQIPSGSMMPTLLIGDFILVEKFAH----PKRGDIVVFKYPED----------PKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSACENALPVTYSNVEPSDFVQTFTSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDLRLSRIGGIH [Model]
	173-336	3s04B	21%	>target ALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLE--------------------------------------------------------------------PMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKVSDT-IYHDQAITRGP-- >3s04B FIYEPFQIPSGSMMPTLLIGDFILVEKFAT--GHPKRGDIVVFKYPE----------DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH [Model]

1t7d: CRYSTAL STRUCTURE OF ESCHERICHIA COLI TYPE I SIGNAL PEPTIDASE IN COMPLEX WITH A LIPOPEPTIDE INHIBITOR
Solved by: X-RAY, Resolution: 2.47A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	174-325	1t7dA	22%	>target LAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLE------------------------------------------------------P------------MSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPP----SKVSDT- >1t7dA IYEPFQIPSGSMMPTLLIGDFILVEKF-----HPKRGDIVVFKYPE----------DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCNALPVTYSNVEPSDFVQTFSRREATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDLRLSRIGGIH [Model]
	174-324	1t7dB	23%	>target LAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEE-------------------DFVLE-------------------------------------P------------MSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKVSD--------------- >1t7dB IYEPFQIPSGSMMPTLLIGDFILVEKFAET-GHPKRGDIVVFKYPE----------DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH [Model]

3k2z: CRYSTAL STRUCTURE OF A LEXA PROTEIN FROM THERMOTOGA MARITI
Solved by: X-RAY, Resolution: 1.37A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	177-240	3k2zA	14%	>target ----------------------------------------------------------------------------------------------------------PKSIPSTSMYPT-LDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIV-------------------------------------- >3k2zA DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKPRALRISKSIRNKIPLIGEIRAGEKREAIEYLEDYIEIPESFLSSGYDHFLLKVKGESMIEEHICDGDLVLVRRQ----DWAQNGDIVAAMVD-------------GEVTLAKFYQRGDTVELRPANREMSSMFFRAEKVKILGKVVGVFRKL [Model]
	176-240	3k2zB	14%	>target ------------------------------------------------------------------------------------------------------------EPKSIPSTSMY-PTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIV-------------------------------------- >3k2zB DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKNGKPRALRISKSIRNKIPLIGEIRAGEKREAIEYLEDYIEIPESFLSSGYDHFLLKVKGESMIEEHICDGDLVLVRRQ----DWAQNGDIVAAMVD-------------GEVTLAKFYQRGDTVELRPANREMSSMFFRAEKVKILGKVVGVFRKL [Model]

1f39: CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR C-TERMINAL DOMAI
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	177-244	1f39B	12%	>target ------PKSIPSTSM------YPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEG------------------------------------- >1f39B ASASAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG------------GDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNESCSVVGKVIASQWPEETFG [Model]
	177-244	1f39A	12%	>target ------PKSIPSTSM------YPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEG------------------------------------- >1f39A ASASAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG------------GDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNESCSVVGKVIASQWPEETFG [Model]

3bdn: CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR
Solved by: X-RAY, Resolution: 3.91A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	176-242	3bdnA	11%	>target --------------------------------------------------------------------------------------------------------------------------------------------EPKSIPSTSM------YPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVAS------------------------------------- >3bdnA STKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG------------GDEFTFKKLIRGSGQVFLQPLNPQYPMIPESCSVVGKVIASQWPEETFG [Model]
	176-242	3bdnB	11%	>target --------------------------------------------------------------------------------------------------------------------------------------------EPKSIPSTSM------YPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVAS------------------------------------- >3bdnB STKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG------------GDEFTFKKLIRGSGQVFLQPLNPQYPMIPESCSVVGKVIASQWPEETFG [Model]

2ho0: STRUCTURE OF A HYPER-CLEAVABLE MONOMERIC FRAGMENT OF PHAGELAMBDA REPRESSOR CONTAINING THE CLEAVAGE SITE REGION
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

177-249

2ho0A

11%

2hnf: STRUCTURE OF A HYPER-CLEAVABLE MONOMERIC FRAGMENT OF PHAGELAMBDA REPRESSOR CONTAINING THE CLEAVAGE SITE REGION
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

177-242

2hnfA

1kca: CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR C-TERMINAL DOMAIOCTAMER
Solved by: X-RAY, Resolution: 2.91A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

177-322	1kcaA	9%	>target ------PKSIPSTSM------YPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKV- >1kcaA ASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG------------GDEFTFKKLIRDS-GQVFLQPL------------------NPQYPMIPCNE--------------S---------CSVVGKVIASQWPEETFG [Model]
177-322	1kcaH	9%	>target ------PKSIPSTSM------YPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKV- >1kcaH ASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG------------GDEFTFKKLIRDS-GQVFLQPL------------------NPQYPMIPCNE--------------S---------CSVVGKVIASQWPEETFG [Model]
177-322	1kcaD	9%	>target ------PKSIPSTSM------YPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKV- >1kcaD ASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG------------GDEFTFKKLIRDS-GQVFLQPL------------------NPQYPMIPCNE--------------S---------CSVVGKVIASQWPEETFG [Model]
177-322	1kcaG	9%	>target ------PKSIPSTSM------YPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKV- >1kcaG ASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG------------GDEFTFKKLIRDS-GQVFLQPL------------------NPQYPMIPCNE--------------S---------CSVVGKVIASQWPEETFG [Model]
177-322	1kcaC	9%	>target ------PKSIPSTSM------YPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKV- >1kcaC ASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG------------GDEFTFKKLIRDS-GQVFLQPL------------------NPQYPMIPCNE--------------S---------CSVVGKVIASQWPEETFG [Model]
177-322	1kcaF	9%	>target ------PKSIPSTSM------YPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKV- >1kcaF ASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG------------GDEFTFKKLIRDS-GQVFLQPL------------------NPQYPMIPCNE--------------S---------CSVVGKVIASQWPEETFG [Model]
177-322	1kcaB	9%	>target ------PKSIPSTSM------YPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKV- >1kcaB ASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG------------GDEFTFKKLIRDS-GQVFLQPL------------------NPQYPMIPCNE--------------S---------CSVVGKVIASQWPEETFG [Model]
177-322	1kcaE	9%	>target ------PKSIPSTSM------YPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKV- >1kcaE ASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG------------GDEFTFKKLIRDS-GQVFLQPL------------------NPQYPMIPCNE--------------S---------CSVVGKVIASQWPEETFG [Model]

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.