SWISS-MODEL Repository - Model Details

Model Overview
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1
1054

Sequence
UniProt O04932
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Glycos_transf_1
Sucrose_synth
S6PP

Model 3D Structure
Model information:
Modelled residue range: 168 to 669
Based on template: [ 2r60 ]  
Sequence Identity [%]: 28%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    168        IVLIS LHGLIRGENM ELGRDSDTGG QVKYVVELAR ALGSMPGVYR
2r60A     7     ikh--vafln pqgnfdpads ywtehpdfgg qlvyvkevsl alaem-g-vq
                                                                      
TARGET               sssss                       hhhhhhhhhh hhh      s
2r60A            ss  sssss                       hhhhhhhhhh hhhh     s


TARGET    213   VDLLTRQVSS PEVDWSYGEP TEMLPPRNSE NMMDEMGESS GSYIVRIPFG
2r60A     53    vdiitrrikd enwpefsge- ---------- --idyyqetn kvrivripfg
                                                                      
TARGET          sssssss             h hhh         sss       sssssss   
2r60A           sssssss            s               ss       sssssss   


TARGET    263   PKDKYVAKEL LWPHIPEFVD GALGHIIQMS KVLGEQIGNG HPIWPAAIHG
2r60A     90    gd-kflpkee lwpylheyvn kiinfy---- r--------e egkfpqvvtt
                                                                      
TARGET                      h   hhhhh hhhhssssss s  sssssss       ssss
2r60A                          hhhhhh hhhhhh     h        h h     ssss


TARGET    313   HYADAGDSAA LLSGALNVPM LFTGHSLGRD KLEQLLRQGR LSRDEINSTY
2r60A     127   hygdgglagv llknikglpf tftghslgaq kmeklnv-nt snfkemderf
                                                                      
TARGET          sshhhhhhhh hhhhhh  ss sss     hh hh            hhhhh  
2r60A           sshhhhhhhh hhhhhh  ss sss     hh hh            hhhhh  


TARGET    363   KIMRRIEAEE LSLDASEMVI TSTRQEIEEQ WRLYDGFDPI LERKLRARIK
2r60A     176   kfhrriiaer ltmsyadkii vstsqerfgq yshdl----- -yrga-----
                                                                      
TARGET           hhhhhhhhh hhhhh   ss s   hhhhhh h                    
2r60A            hhhhhhhhh hhhhh   ss s   hhhhhh h                    


TARGET    413   RNVSCYGRFM PRMMVIPPGM EFHHIVPHDG DLDAEPEFNE DSKSPDPHIW
2r60A     215   ----vnvedd dkfsvippgv ntrvfdgeyg ---------- --dkikakit
                                                                      
TARGET                      sssss                sssss  sss ss  hhhhhh
2r60A                       sssss                              hhhhhhh


TARGET    463   TEIMRFFS-- NPRKPMILAL ARPDPKKNLT TLVKAFGECK PLRELANLTL
2r60A     249   kylerdlgse rmelpaiias srldqkknhy glveayvqnk elqdkanlvl
                                                                      
TARGET          hhhhhh         sssss           h hhhhhh   h hhh   ssss
2r60A           hhhhhh         sssss           h hhhhhh   h hhhh  ssss


TARGET    511   IMGNRDNIDE MS----GTNA SVLLSILKMI DKYDLYGLVA YPKHHKQSDV
2r60A     299   tlrgienpfe dysragqeek eilgkiieli dnndcrgkvs mfplnsqqel
                                                                      
TARGET          ss                 hh hhhhhhhhhh hh     sss ss    hhhh
2r60A           ss               hhhh hhhhhhhhhh hh     sss ssss  hhhh


TARGET    557   PDIYRLAAKT KGVFINPAFI EPFGLTLIEA AAHGLPIVAT KNGGPVDIHR
2r60A     349   agcyaylask gsvfaltsfy epfglapvea masglpavvt rnggpaeild
                                                                      
TARGET          hhhhhhhhhh   ssss          hhhhh hhh  sssss s   hhhhh 
2r60A           hhhhhhhhh    ssss          hhhhh hhh  sssss s   hhhhh 


TARGET    607   VLDNGILVDP HNQESIADAL LKLVAEKHLW AKCRANGLKN I-HLFSWPEH
2r60A     399   ggkygvlvdp edpediargl lkafeseetw sayqekgkqr veerytwqet
                                                                      
TARGET               sss     hhhhhhhh hh   hhhhh hhhhhhhhhh h h    hhh
2r60A                sss     hhhhhhhh hh   hhhhh hhhhhhhhhh hhh   hhhh


TARGET    656   CKSYLSKLAS CKPR                                       
2r60A     449   argyleviqe iadr-                                      
                                                                      
TARGET          hhhhhhhhhh hhhh                                       
2r60A           hhhhhhhhhh hhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 99b5fba6dba9471df36b3ccc8fe04615 on BC2-cluster at Mon Sep  1 02:07:36 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>99b5fba6dba9471df36b3ccc8fe04615
**********************************************************************************
>2r60A Evalue:9E-38 SeqID:28.291 Method:HHSEARCH Type:MODEL
-------------*****-***-********-**-****************-------------------------------
>1s2oA Evalue:3.2E-05 SeqID:13.592 Method:HHSEARCH Type:MODEL
-------------------------------------------------------------****-***********-----


TEMPLATE ID    START          STOP           METHOD         STATUS         
2r60A          168            669            HHSEARCH       BUILT          
1s2oA          795            1000           HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 99b5fba6dba9471df36b3ccc8fe04615 on gopt-68.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 02:16:28 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.