SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
1054

Sequence
UniProt O04932
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Glycos_transf_1
Sucrose_synth
S6PP

Model 3D Structure
Model information:
Modelled residue range: 795 to 1000
Based on template: [ 1s2o ]  
Sequence Identity [%]: 13%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    795                                AVE NERAEGSVGF ILATSFNISE
1s2oA     1     mrqlllisdl dntwvgdqqa lehlq--eyl gdrrgn-fyl ayatgrsyhs
                                                                      
TARGET                                         h h        s ssss   hhh
1s2oA              ssssss         hhh hhhhh  hhh h       ss ssss   hhh


TARGET    818   IRHFLVSEKL NPTDFDAFIC NSGGDLYYSS HHSEDNPFVV DLYYHSQIEY
1s2oA     48    arelqk--qv glmepdywlt avgseiyhpe gl-------- dqhwadylse
                                                                      
TARGET          hhhhhh           ssss s  ssss                hhhhhhhh 
1s2oA           hhhhhh  h        ssss s  ssss                hhhhhhhh 


TARGET    868   RWGGEGLRKT LVRWAASITD KKGEKEEHVI IEDEETSADY CYSFKVQKPN
1s2oA     88    hwqrdilqa- ---iadgfea lk----pqsp leqnp----w kisyhldpqa
                                                                      
TARGET             hhhhh            s ss                     ssssss   
1s2oA              hhhhhh     hhh   s ss    ss               ssssss   


TARGET    918   VVPPVKEARK VMRIQALRCH VVYCQNGNKI NVIPVLASRA QALRYLYLRW
1s2oA     126   cptvidqlte mlketgipvq vifss-gkdv dllpqrsnkg natqylqqhl
                                                                      
TARGET            hhhhhhhh hhh    sss ssss   sss sssss   hh hhhhhhhhhh
1s2oA             hhhhhhhh hhh    sss ssss   sss sssss   hh hhhhhhhhhh


TARGET    968   GMELSKTVVV VGESGDTDYE EMLGGVHKTV VLS ------ ----------
1s2oA     175   amepsq-tlv cgds-gnd-i glfetsargv ivrnaqpell hwydqwgdsr
                                                                      
TARGET                 sss ss                sss ss                   
1s2oA                s sss ss         hhh    sss ss    hhhh hhhhh    s


TARGET          ---------- ---------- ---                             
1s2oA     222   hyraqsshag aileaiahfd fls                             
                                                                      
TARGET                                                                
1s2oA           ssss     h hhhhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 99b5fba6dba9471df36b3ccc8fe04615 on BC2-cluster at Mon Sep  1 02:07:36 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>99b5fba6dba9471df36b3ccc8fe04615
**********************************************************************************
>2r60A Evalue:9E-38 SeqID:28.291 Method:HHSEARCH Type:MODEL
-------------*****-***-********-**-****************-------------------------------
>1s2oA Evalue:3.2E-05 SeqID:13.592 Method:HHSEARCH Type:MODEL
-------------------------------------------------------------****-***********-----


TEMPLATE ID    START          STOP           METHOD         STATUS         
2r60A          168            669            HHSEARCH       BUILT          
1s2oA          795            1000           HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 99b5fba6dba9471df36b3ccc8fe04615 on gopt-68.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 02:16:28 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.