SWISS-MODEL Repository
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
| UniProt | O06993 |
Database: TrEMBL (Unreviewed)  |
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Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2011-04-14. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
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Alignment
TARGET 3 NQRLFEID EWKIKTNTFN KEHTRLLESL TSLANGYMGV RGNFEEGYSG
1h54B 1 mkrifevq pwnvithtfd pkdkrlqesm tslgngymgm rgdfeegysg
TARGET sssss hhhhhhh sss ssss s
1h54B sssss hhhhhhh sss ssss s
TARGET 51 DSHQGTYIAG VWFPDKTRVG WWKNGYPEYF GKVINAMNFM GIGLYVDGEK
1h54B 49 dslqgiylgg vwypdktrvg wwkngypkyf gkvvnavnfi klpieingep
TARGET sssss sssssss sss ssss sssssss ss
1h54B sssss sssssss sss ssss sssssss ss
TARGET 101 IDLHQNPIEL FEVELNMKEG ILRRSAVVRI QDKTVRIRSE RFLSLAVKEL
1h54B 99 vdlakdkisd ftldldmhqg vlnrsfvver gavrvalnfq rflsvaqpel
TARGET s sss ssssss ssssssssss ssssssss ssss ss
1h54B s sss ssssss ssssssssss ssssssss ssss ss
TARGET 151 CAIHYEAECL T-GDAVITLV PYLDGNVANE DSNYQEQFWQ EEAKGADSHS
1h54B 149 svqkvtvknl sdaevdvtlk psidadvmne eanyderfwd vlatdqqadr
TARGET ssssssssss ssssss sssss sss sssssss s
1h54B ssssssssss ssssss sssss sss sssssss s
TARGET 200 GHLAAKTIEN PFGTPRFTVL AAMANE---- TEGFVHESFK TTEMYVENRY
1h54B 199 gsivakttpn pfgtprftsg memrlvtdlk nvaitqpnek evttaytgkl
TARGET ssssssss ssss ssss sss s ssssssssss
1h54B ssssssss ssss ssssss s ss s ssssssssss
TARGET 246 SYQTKASLKK FVIVTTSRDF REEE-LLSKA KELLADVVEN GYEDAKRRHT
1h54B 249 apqasaelek rvivvtsrdy dtqesltaam hqlsdkvaqs syedllnaht
TARGET sssssss sssssss hhh hhhhhhhh hhhhhhhhh
1h54B sssssss sssssss hhhhhhhh hhhhhhhh hhhhhhhhh
TARGET 295 DRWKERWAKA DIEIKGDEEL QQGIRYNIFQ LFSTYYGGDA RLNIGPKGFT
1h54B 299 aiwaqrweks dvvikgddes qqgirfnlfq lfstyygeda rlnigpkgft
TARGET hhhhhhhhh sss hhh hhhhhhhhhh hhhh
1h54B hhhhhhhhh sss hhh hhhhhhhhhh hhhh
TARGET 345 GEKYGGAAYW DTEAYAVPMY LATAEPEVTK NLLLYRYHQL EAAKRNAAKL
1h54B 349 gekyggatyw dteafafpvy lgitdpkvtr nllmyrykql dgayinaqeq
TARGET hhhhhhhhhh hh hhhh hhhhhhh hhhhhhhh
1h54B hhhhhhhhhh hh hhhh hhhhhh h hhhhhhhh
TARGET 395 GMKGALYPMV TFTGDECHNE WEITFEEIHR NGAICYAIYN YINYTGDRNY
1h54B 399 glkgalfpmv tfdgiechne weitfeeihr ngdiafaiyn ytrytgddsy
TARGET hhhhh hh hhhhhhhhhh hhhhh hh
1h54B hhhhh hh hhhhhhhhhh hhhhh hh
TARGET 445 MEEYGIDVLV AVSRFWADRV HFSKRKNKYM IHGVTGPNEY ENNVNNNWYT
1h54B 449 vlhegakvlt eisrfwadrv hfskrnnqym ihgvtgadey ennvdnnwdt
TARGET h hhhhhh hhhhhhhhh sss sss ssss ssss hhh
1h54B h hhhhhh hhhhhhhhh sss sss ssss ssss hhh
TARGET 495 NVIAAWTLEY TLQSLESISA EKRRHLDVQE VELEVWREII QHMYYPFSEE
1h54B 499 nmlaqwtlky tleilgkvdq dtakqldvsd eektkwqdiv drmylpydkd
TARGET hhhhhhhhhh hhhhh h hhhhhh h hhhhhhhhhh h ssss
1h54B hhhhhhhhhh hhhhh h hhhhhh h hhhhhhhhhh h ssss
TARGET 545 LQIFVQHDTF LDKDLQTVDE LDPAERPLYQ NWSWDKILRS NFIKQADVLQ
1h54B 549 lnifvqhdgf ldkdiepvss ipadqrpinq nwswdkilrs pyikqgdvlq
TARGET ssss hhhhhh hhh
1h54B ssss hhhhhh hhh
TARGET 595 GIYLFNDRFT MEEKRRNFEF YEPMTVHESS LSPSVHAILA AELKLEKKAL
1h54B 599 giwdfiddyt peqkkanfdf yepltvhess lspaihsvla adlhyedkav
TARGET hhhh hhhhhhhhhh hhhh hhhhhhhhhh h hhhhhh
1h54B hhhh hhhhhhhhhh hhhh hhhhhhhhhh h hhhhhh
TARGET 645 ELYKRTARLD LDNYNHDTEE GLHITSMTGS WLAIVHGFAG MRTANETLSF
1h54B 649 elysrtarld ldnynndttd glhitsmtga wiavvqgfag mrvrdgqlhy
TARGET hhhhhhh hhhhhhh hhhhhh sss ssss
1h54B hhhhhhh hh hh hhhhh sss ssss
TARGET 695 APFLPKEWDE YSFNINYRNR LINVTVDEKR VIFELVKGEP LHMNVYEEPV
1h54B 699 apflpktwts ytfrqvfrdr lievsvhadg phfkllsgep ltidvagaaa
TARGET s sssssss s sssssss s ssssss ssssss sss
1h54B s sssssss s sssssss s ssssss ssssss sss
TARGET 745 VLQG -
1h54B 749 aaaaaa
TARGET ss
1h54B ss
no data available!
no data available!
Template Selection
- Start SMR-Pipeline for:07d2a4406528e1c40f0843fb127099b1 on BC2-cluster at Thu Apr 14 22:17:51
2011
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
- Run HHSearch to detect more templates...
- Proof template(s) selection compared to previous Repository update
- Selected template(s): no changes compared to previous version of the Repository:
- Template: 1h54B (3-748) Sequence Identity: 54.388
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:07d2a4406528e1c40f0843fb127099b1 on BC2-cluster at Thu Apr 14 22:18:06
2011
Template Search
| Template Description |
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1h54: Not available |
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2wvz: Not available |
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3act: Not available |
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2rdy: Not available |
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1lf6: Not available |
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2cqs: Not available |
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2eab: Not available |
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1ulv: Not available |
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3cih: Not available |
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2okx: Not available |
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1v7w: Not available |
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.