SWISS-MODEL Repository - Model Details

Model Overview
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1
389

Sequence
UniProt O08892
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
O08892: 10141.ENSCPOP000

Domain
Link to: [ InterPro ]
7tm_1

Model 3D Structure
Model information:
Modelled residue range: 133 to 164
Based on template: [ 1hof ]  
Sequence Identity [%]: 68%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    133     TASIMHLC VIALDRYWAI TDAVGYSAKR TPRR                 
1hofA     1       tssivhlc aisldrywsi tqaieynlkr tprr-                
                                                                      
TARGET                hhhh hh      hh hh                              
1hofA                 hhhh hh      hh hh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 390b8e00fcb5d40fc8ac9d4021dcc82f on BC2-cluster at Fri Aug 29 21:53:48 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>390b8e00fcb5d40fc8ac9d4021dcc82f
******************************************************************************
>1hofA Evalue:7.20581e-07 SeqID:68.750 Method:BLAST Type:MODEL
--------------------------*******---------------------------------------------
>2z73A Evalue:5.6E-40 SeqID:20.904 Method:HHSEARCH Type:MODEL
--------******************************************---------*******************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1hofA          133            164            BLAST          BUILT          
2z73A          41             387            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 390b8e00fcb5d40fc8ac9d4021dcc82f on gopt-55.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 21:57:06 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.