SWISS-MODEL Repository - Model Details

Model Overview
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1
761

Sequence
UniProt O13166
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
WD40
WD40
WD40
WD40
WD40
TLE_N

Model 3D Structure
Model information:
Modelled residue range: 432 to 761
Based on template: [ 2ce8 ]  
Sequence Identity [%]: 94%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    432            G GKPAYSFHVS ADGQMQPVPF PPDALIGPGI PRHARQINTL
2ce8C     434   dyfqgam--g skpaysfhvt adgqmqpvpf ppdaligpgi prharqintl
                                                                      
TARGET                         ssssss    sssss                ssssssss
2ce8C                          ssssss    sssss                ssssssss


TARGET    473   SHGEVVCAVT ISNPTRHVYT GGKGCVKIWD ISQPGSKSPV SQLDCLNRDN
2ce8C     482   nhgevvcavt isnptrhvyt ggkgcvkvwd ishpgnkspv sqldclnrdn
                                                                      
TARGET                 sss ss   sssss ssssssssss s          sssss    s
2ce8C                  sss ss   sssss ssssssssss s          sssss    s


TARGET    523   YIRSCKLLPD GRTLIVGGEA STLTIWDLAS QTPRIKAELT SSAPACYALA
2ce8C     532   yirsckllpd gctlivggea stlsiwdlaa ptprikaelt ssapacyala
                                                                      
TARGET          ssssssss    ssssssss  ssssssss      sssssss s   ssssss
2ce8C           ssssssss    ssssssss  ssssssss      sssssss s   ssssss


TARGET    573   ISPDAKVCFS CCSDGNIAVW DLHNQTLVRQ FQGHTDGASC IDISHDGTKL
2ce8C     582   ispdskvcfs ccsdgniavw dlhnqtlvrq fqghtdgasc idisndgtkl
                                                                      
TARGET          ss   sssss sss  sssss ss   sssss s     ssss ssss   sss
2ce8C           ss   sssss sss  sssss ss   sssss s     ssss ssss   sss


TARGET    623   WTGGLDNTVR SWDLREGRQL QQHDFASQIF SLGYCPTGEW LAVGMESSNV
2ce8C     632   wtggldntvr swdlregrql qqhdftsqif slgycptgew lavgmessnv
                                                                      
TARGET          sssss ssss ssss   sss sssss  sss sssss   ss ssssss  ss
2ce8C           sssss ssss ssss   sss sssss  sss sssss   ss ssssss  ss


TARGET    673   EVLHHTKPDK YQLHLHESCV LSLKFAYCGK WFVSTGKDNL LNAWSTPYGA
2ce8C     682   evlhvnkpdk yqlhlhescv lslkfaycgk wfvstgkdnl lnawrtpyga
                                                                      
TARGET          sssss   ss ssss    ss ssssss   s sssssss ss ssssss   s
2ce8C           sssss   ss ssss    ss ssssss   s sssssss ss ssssss   s


TARGET    723   SIFQSKESSS VLSCDISADD KYIVTGSGDK KATVYEVIY            
2ce8C     732   sifqskesss vlscdisvdd kyivtgsgdk katvyeviy-           
                                                                      
TARGET          sssssss  s sssssss    ssssssss   ssssssss             
2ce8C           sssssss  s sssssss    ssssssss   ssssssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: ef626d1474626f14cbf344c19d2b3d37 on BC2-cluster at Mon Sep  1 01:34:16 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>ef626d1474626f14cbf344c19d2b3d37
*****************************************************************************
>2ce8C Evalue:0 SeqID:94.848 Method:BLAST Type:MODEL
-------------------------------------------**********************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
2ce8C          432            761            BLAST          BUILT          

FINISHED PIPELINE ON ID: ef626d1474626f14cbf344c19d2b3d37 on gopt-7.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 01:44:03 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.