SWISS-MODEL Repository - Model Details

Model Overview
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1
2363

Sequence
UniProt O14187
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
O14187: 4896.SPAC4F8.12c

Domain
Link to: [ InterPro ]
JAB
PRO8NT
PROCN
PROCT
U6-snRNA_bdg
U5_2-snRNA_bdg
RRM_4
PRP8_domainIV

Model 3D Structure
Model information:
Modelled residue range: 2093 to 2342
Based on template: [ 2p87 ]  
Sequence Identity [%]: 56%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    2093    SKTEWRNR AISSISLPLR TKNIYVNSDN ISETFPYTYI LPQNLLRKFV
2p87A     2062    srtewrvr aisstnlhlr tqhiyvnsdd vkdt-gytyi lpknilkkfi
                                                                      
TARGET             hhhhhhh hhh   hhhh h sssss           sss ssshhhhhhh
2p87A              hhhhhhh hhh   hhhh h sssss           sss ssshhhhhhh


TARGET    2141  TISDLRTQVA GYMYGKSPSD NPQIKEIRCI ALVPQLGSIR NVQLPSKLPH
2p87A     2109  tisdlrtqia gfmygvsppd npqvkeirci vlvpqtgshq qvnlptqlp-
                                                                      
TARGET          h       ss ssssss       ssssssss ss   sss   sss       
2p87A           h       ss ssssss       ssssssss ss   sss   sss       


TARGET    2191  DLQPSILEDL EPLGWIHTQS SELPYLSSVD VTTHAKILSS HPEWD-TKAV
2p87A     2158  --dhellrdf eplgwmhtqp nelpqlspqd vtthaklltd niswdgektv
                                                                      
TARGET              hhhh   sssssssss         hhh hhhhhhhhhh          s
2p87A               hhhh   sssssssss         hhh hhhhhhhhhh          s


TARGET    2240  TLTVSYIPGS ISLAAYTVSK EGIEWGSKNM DINSDEAIGY EPSMAEKCQL
2p87A     2206  mitcsftpgs vsltaykltp sgyewgkant dk-gnnpkgy mpthyekvqm
                                                                      
TARGET          sssssss  s sssssssssh hhhhhhhh                 sssssss
2p87A           sssssss  s sssssssssh hhhhhhhh                 sssssss


TARGET    2290  LLSDRIQGFF LVPEEGVWNY NFNGASFSPK MTYSLKLDVP LPFFALEHRP
2p87A     2255  llsdrflgyf mvpsngvwny nfqgqrwspa mkfdvclsnp keyyhedhrp
                                                                      
TARGET          sss     ss ssss                     sssss             
2p87A           sss     ss ssss                     sssss             


TARGET    2340  THV                                                   
2p87A     2305  vhf-                                                  
                                                                      
TARGET                                                                
2p87A

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 15058c43fa4189ec15922324093551b7 on BC2-cluster at Mon Sep  1 05:45:08 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>15058c43fa4189ec15922324093551b7
*******************************************************************************
>2p87A Evalue:0 SeqID:56.175 Method:HHSEARCH Type:MODEL
----------------------------------------------------------------------********-


TEMPLATE ID    START          STOP           METHOD         STATUS         
2p87A          2093           2342           HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 15058c43fa4189ec15922324093551b7 on gopt-73.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 06:01:34 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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