SWISS-MODEL Repository

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SWISS-MODEL Repository - Model Details

Model Overview

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642

Sequence

UniProt

O15945

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain

Link to: [ InterPro ]

	HLH
	PAS
	PAS_3

Model 3D Structure

	Model information:
	Modelled residue range:	14 to 68
	Based on template:	[ 4h10 ]
	Sequence Identity [%]:	63%
	Model date:	2013-02-14
	Revision date:	2013-01-30

Quaternary structure information:	[details]
Template (4h10): HETERO DIMER Model built :SINGLE CHAIN

Ligand information:	[details]
Ligands in the template: DA: 1, DC: 1, DG: 1. Ligands in the model: none.

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]

Alignment


TARGET    1           SREN HCEIERRRRN KMTAYITELS DMVPTCSALA RKPDKLTILR
4h10A     69    rikn--area hsqiekrrrd kmnsfidela slvptcnams rkldkltvlr
                                                                      
TARGET                 hhh hhhhhhhhhh hhhhhhhhhh    hhhh        hhhhhh
4h10A              h  hhhh hhhhhhhhhh hhhhhhhhhh    hhhh        hhhhhh


TARGET    45    MAVAHMKALR G                                          
4h10A     117   mavqhmktlr ga                                         
                                                                      
TARGET          hhhhhhhhh                                             
4h10A           hhhhhhhhh

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Ligands in the template: DA: 1, DC: 1, DG: 1. 
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page. 
No ligands were included in the model.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template
4h10 is annotated as HETERO DIMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 4h10.pdb1.gz

Quaternary Structure Modelling of the Target Protein
4h10_1

Template Selection

 - Start SMR-Pipeline for:4f257250278065c7215decfa892f83f4 on BC2-cluster at Thu Feb 14 04:50:14
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1
 - But still uncovered regions of the target sequence detected, go for: HHSEARCH

FATAL - No A3m found

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with A found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with H found
 - No template with F found
 - No template with E found
 - No template with A found
 - No template with G found
 - No template with D found
 - No template with A found
 - No template with A found
 - No template with D found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with B found
 - No template with A found
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:7): model based on new templates
 - Send 7 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -   *******
 - building model based on 4h10A (14-68) was successful 
 -                                    *************
 - building model based on 2a24B (283-387) was successful 
 -   **********************************************
 - building model based on 4f3lB (14-384) was successful 
 -                                     *****************
 - building model based on 4dj2C (285-418) was successful 
 -                                 ********************
 - building model based on 4dj2D (258-414) was successful 
 -                              ************************
 - building model based on 3gdiB (229-421) was successful 
 -           ******************************************
 - building model based on 4dj2B (81-418) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:4f257250278065c7215decfa892f83f4 on BC2-cluster at Thu Feb 14 05:45:57
2013

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

4h10: INTERMOLECULAR RECOGNITION REVEALED BY THE COMPLEX STRUCTUCLOCK-BMAL1 BASIC HELIX-LOOP-HELIX DOMAINS WITH E-BOX DNA
Solved by: X-RAY, Resolution: 2.40A, Identified by BLAST
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

14-68

4h10A

64%

4atk: MITF:E-BOX COMPLEX
Solved by: X-RAY, Resolution: 2.95A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	14-68	4atkB	33%	>target SRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRG----- >4atkB KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA [Model]
	16-68	4atkA	34%	>target ENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRG--------- >4atkA DNHNLIERRRRFNINDRIKELGTLIPKDP--DMRWNKGTILKASVDYIRKLQREQQRAKDLE [Model]

4ati: MITF:M-BOX COMPLEX
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	14-68	4atiB	33%	>target --SRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRG--------------- >4atiB RQKKDNHNLIERRRRFNINDRIKELGTLIPKSDP-DMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKL [Model]
	18-68	4atiA	33%	>target HCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRG---------- >4atiA HNLIERRRRFNINDRIKELGTLIPKS----MRWNKGTILKASVDYIRKLQREQQRAKDLEN [Model]

4ath: MITF APO STRUCTURE
Solved by: X-RAY, Resolution: 1.95A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	25-68	4athB	25%	>target --RRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRG------------------------------------ >4athB GAMRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQARAH [Model]
	26-68	4athA	26%	>target -RNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRG------------------------------------ >4athA MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQARAH [Model]

3nja: THE CRYSTAL STRUCTURE OF THE PAS DOMAIN OF A GGDEF FAMILY CHROMOBACTERIUM VIOLACEUM ATCC 12472.
Solved by: X-RAY, Resolution: 2.37A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

286-386	3njaC	15%	>target ----ITRHAMDGKFTFVDQRVLNILGYTPTELLGK--ICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNSSG--- >3njaC AGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLG-DRPFDVEYRIVRPDGQVRELLERNHIQRQA-SGQVDHLWGTVIDMTEH [Model]
288-384	3njaD	15%	>target ----RHAMDGKFTFVDQRVLNILGYTPTELLG--KICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNS---- >3njaD IGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVL-GDRPFDVEYRIVRPDGQVRELLERNHIQRQA-SGQVDHLWGTVIDMTE [Model]
100-150	3njaD	19%	>target --LFVVSCDSGRVIYVSDSVTPVLNYTQSDWYG--TSLYEHIHPDDREKIREQLS--------------------------------------------------- >3njaD IGSWVLHME-SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTE [Model]
100-150	3njaC	21%	>target ----LFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGT--SLYEHIHPDDREKIREQLS---------------------------------------------------- >3njaC AGIGSWVLHME-SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEH [Model]
286-384	3njaB	15%	>target -----ITRHAMDGKFTFVDQRVLNILGYTPTELLGK--ICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNS---- >3njaB DAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLG-DRPFDVEYRIVRPDGQVRELLERNHIQRQA-SGQVDHLWGTVIDMTE [Model]
287-384	3njaA	15%	>target ----TRHAMDGKFTFVDQRVLNILGYTPTELLGK--ICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNS---- >3njaA GIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVL-GDRPFDVEYRIVRPDGQVRELLERNHIQRQA-SGQVDHLWGTVIDMTE [Model]
100-150	3njaB	19%	>target -----LFVVSCDSGRVIYVSDSVTPVLNYTQSDWYG--TSLYEHIHPDDREKIREQLS--------------------------------------------------- >3njaB DAGIGSWVLHME-SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTE [Model]
100-150	3njaA	21%	>target ---LFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGT--SLYEHIHPDDREKIREQLS--------------------------------------------------- >3njaA GIGSWVLHME-SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTE [Model]

1x0o: HUMAN ARNT C-TERMINAL PAS DOMAIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	279-389	1x0oA	50%	>target -----SNNQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNSSGKTM--- >1x0oA GAMDNVCQPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQE [Model]
	98-151	1x0oA	19%	>target ----------GFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLST-------------------------------------------------------- >1x0oA GAMDNVCQPTEFISRHNIE-GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQE [Model]

4h6j: IDENTIFICATION OF CYS 255 IN HIF-1 AS A NOVEL SITE FOR DEVCOVALENT INHIBITORS OF HIF-1 /ARNT PASB DOMAIN PROTEIN-PRINTERACTION.
Solved by: X-RAY, Resolution: 1.52A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	281-387	4h6jB	51%	>target ---NQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNSSGK- >4h6jB SVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKN [Model]
	98-151	4h6jB	19%	>target ------GFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLST---------------------------------------------------- >4h6jB SVCQPTRFISRHNIE-GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKN [Model]

2hv1: HADDOCK STRUCTURE OF ARNT PAS-B HOMODIMER
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

281-387	2hv1B	52%	>target -NQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNSSGK >2hv1B CQPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVK [Model]
281-387	2hv1A	52%	>target -NQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNSSGK >2hv1A CQPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVK [Model]
98-151	2hv1B	19%	>target ----GFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLST--------------------------------------------------- >2hv1B CQPTEFISRHNIE-GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVK [Model]
98-151	2hv1A	19%	>target ----GFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLST--------------------------------------------------- >2hv1A CQPTEFISRHNIE-GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVK [Model]

3h7w: CRYSTAL STRUCTURE OF THE HIGH AFFINITY HETERODIMER OF HIF2ALPHA AND ARNT C-TERMINAL PAS DOMAINS WITH THE ARTIFICIALLIGAND THS017
Solved by: X-RAY, Resolution: 1.65A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	281-388	3h7wB	51%	>target -NQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNSSGKT- >3h7wB CQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNS [Model]
	98-150	3h7wB	19%	>target ----GFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLS------------------------------------------------------ >3h7wB CQPTRFISRHNIE-GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNS [Model]

2a24: HADDOCK STRUCTURE OF HIF-2A/ARNT PAS-B HETERODIMER
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	281-387	2a24B	52%	>target -NQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNSSGK >2a24B CQPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVK [Model]
	98-151	2a24B	19%	>target ----GFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLST--------------------------------------------------- >2a24B CQPTEFISRHNIE-GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVK [Model]

3f1n: CRYSTAL STRUCTURE OF A HIGH AFFINITY HETERODIMER OF HIF2 ALPHA AND ARNT C-TERMINAL PAS DOMAINS, WITH INTERNALLY BOUND ETHYLENE GLYCOL.
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	281-388	3f1nB	51%	>target --NQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNSSGKT-- >3f1nB VCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSS [Model]
	98-151	3f1nB	19%	>target -----GFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLST------------------------------------------------------ >3f1nB VCQPTRFISRHNIE-GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSS [Model]

3f1o: CRYSTAL STRUCTURE OF THE HIGH AFFINITY HETERODIMER OF HIF2ALPHA AND ARNT C-TERMINAL PAS DOMAINS, WITH AN INTERNALLYBOUND ARTIFICIAL LIGAND
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	281-388	3f1oB	51%	>target --NQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNSSGKT-- >3f1oB VCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSS [Model]
	98-151	3f1oB	19%	>target -----GFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLST------------------------------------------------------ >3f1oB VCQPTRFISRHNIE-GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSS [Model]

3h82: CRYSTAL STRUCTURE OF THE HIGH AFFINITY HETERODIMER OF HIF2ALPHA AND ARNT C-TERMINAL PAS DOMAINS WITH THE ARTIFICIALLIGAND THS020
Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	279-388	3h82B	50%	>target --SNNQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNSSGKT- >3h82B LNVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNS [Model]
	97-150	3h82B	19%	>target ------DGFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLS------------------------------------------------------ >3h82B LNVCQPTRFISRHNIE-GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNS [Model]

3f1p: CRYSTAL STRUCTURE OF A HIGH AFFINITY HETERODIMER OF HIF2 ALPHA AND ARNT C-TERMINAL PAS DOMAINS
Solved by: X-RAY, Resolution: 1.17A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	281-388	3f1pB	51%	>target --NQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNSSGKT- >3f1pB VCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNS [Model]
	98-151	3f1pB	19%	>target -----GFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLST----------------------------------------------------- >3f1pB VCQPTRFISRHNIE-GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNS [Model]

2k7s: HUMAN ARNT C-TERMINAL PAS DOMAIN, 3 RESIDUE IB SLIP
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	282-388	2k7sA	50%	>target --------QSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNSSGKT---- >2k7sA GAMDNVCQPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSQTAQNPYSDEIETIICTNTNVKNSSQE [Model]
	97-151	2k7sA	18%	>target ---------DGFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLST-------------------------------------------------------- >2k7sA GAMDNVCQPTEFISRHNIE-GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSQTAQNPYSDEIETIICTNTNVKNSSQE [Model]

2b02: CRYSTAL STRUCTURE OF ARNT PAS-B DOMAIN
Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	278-385	2b02A	51%	>target --GSNNQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCTNSS- >2b02A MSNVSQPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNV [Model]
	94-151	2b02A	17%	>target ----EAADGFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLST-------------------------------------------------- >2b02A MSNVSQPTEFISRHNIE-GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNV [Model]

2gj3: CRYSTAL STRUCTURE OF THE FAD-CONTAINING PAS DOMAIN OF THE PROTEIN NIFL FROM AZOTOBACTER VINELANDII.
Solved by: X-RAY, Resolution: 1.04A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

280-382	2gj3B	17%	>target -----------NNQSEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVCT------- >2gj3B ELLPEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQ-KKPWSGVLVNRRKDKTLYLAELTVAPVLNEA-GETIYYLGMHRDTSEL [Model]
283-381	2gj3A	17%	>target -------------SEFITRHAMDGKFTFVDQRVLNILGYTPTELLGKICYDFFHPEDQSHMKESFDQVLKQKGQMFSLLYRARAKNSEYVWLRTQAYAFLNPYTDEVEYIVC--------- >2gj3A LLPEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQ-KKPWSGVLVNRRKDKTLYLAELTVAPVLNE-AGETIYYLGMHRDTSELH [Model]
87-149	2gj3B	11%	>target ----ELKHLILEAADGFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQL----------------------------------------------------- >2gj3B ELLPEIFRQTVEHAPIAISITDLK-ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSEL [Model]
88-149	2gj3A	10%	>target ----LKHLILEAADGFLFVVSCDSGRVIYVSDSVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQL------------------------------------------------------ >2gj3A LLPEIFRQTVEHAPIAISITDLK-ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH [Model]

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.