SWISS-MODEL Repository 
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
Domain
Model 3D Structure
|
|
|
|
|||||||||||||||||||||||||||||||
|
Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2012-10-15. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
|
Alignment
TARGET 1 NITGL -LEKAGCKTF ANLLVSSGVL KTYESAVEKG LTVFAPSDEA
1w7d_1#1 21 etg--divet atgagsfttl ltaaeaaglv dtlkgd--gp ftvfaptdaa
TARGET hhhhh h hhh s ss hh
1w7d_1#1 hhh hhh hh h hhhh s sssss hh
TARGET 45 FKAEGVPDLT KL----TQAE VVSLLEYHAL AEYKPKGSLK TNKNNISTLA
1w7d_1#1 67 faalpegtve dllkpenkek lteiltyhvv pgevmssdlt eg----mtae
TARGET hh hhh hh hhh s ss sss
1w7d_1#1 hh hhh hhhhhhh hh s ss ssss
TARGET 91 TNGAGKFDLT TSTSGDEVIL HTGVAPSRLA DTVLDATPVV IFTVDNVLLP
1w7d_1#1 113 tvegg--alt vtlegg-pk- ---vngvsis qpdvdasngv ihvidgvlmp
TARGET ss s sss ss s
1w7d_1#1 s s sss ss ss ss sss sss ss ss
TARGET 141 AE
1w7d_1#1 156 ga-
TARGET
1w7d_1#1
Template's ligands section
Template without ligands.
No ligands were included in the model.
Quaternary Structure Annotation of the Template
1w7d is annotated as MONOMER
The template structure (1w7d) was solved by NMR and does not contain any quaternary structure annotation
The template is annotated by the number of chains found in the PDB file
Quaternary Structure Modelling of the Target Protein
Analysis of evolutionary and family specific aspects revealed conservation of the oligomeric structure
Hence, the oligomeric structures of the target and the template can be assumed to be similar (=MONOMER)
The corresponding reliability score is 0.606 (>0.5 indicates similarity)
Model was succesfully built as MONOMER.
Template Selection
- Start SMR-Pipeline for:44430d741af4c230cd33f5de1650107a on BC2-cluster at Wed Oct 24 08:09:56
2012
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
- Run HHSearch to detect more templates...
- Generate new template library
- Run template selection against modfied template library
- Summarize templates:
- Skip target because not enough coverage or too low seqid: 0.371 11.7
- Skip target because not enough coverage or too low seqid: 0.348 11.8
- Skip target because not enough coverage or too low seqid: 0.348 11.8
- Skip target because not enough coverage or too low seqid: 0.352 14.1
- Skip target because not enough coverage or too low seqid: 0.710 12.5
- Skip target because not enough coverage or too low seqid: 0.357 12.7
- Proof template(s) selection compared to previous Repository update
- Selected template(s): no changes compared to previous version of the Repository:
- Template: 1w7dA (189-330) Sequence Identity: 22.449
- Template: 1nyoA (26-175) Sequence Identity: 17.391
- Template: 1o70A (33-330) Sequence Identity: 12.460
- Send 3 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- ***************************
- building model based on 1w7dA (189-330) was successful
- *****************************
- building model based on 1nyoA (26-175) was successful
- *********************************************************
- building model based on 1o70A (33-330) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:44430d741af4c230cd33f5de1650107a on BC2-cluster at Wed Oct 24 08:12:36
2012
Template Search
| Template Description |
|
||||||||||||||||||||
|
1nyo: SOLUTION STRUCTURE OF THE ANTIGENIC TB PROTEIN MPT70/MPB70 Solved by: NMR, Identified by HHSEARCH |
|
||||||||||||||||||||
|
1w7d: NMR STRUCTURE OF FASCICLIN-LIKE PROTEIN FROM RHODOBACTER SPHAEROIDES Solved by: NMR, Identified by HHSEARCH |
|
||||||||||||||||||||
|
1w7e: NMR ENSEMBLE OF FASCICLIN-LIKE PROTEIN FROM RHODOBACTER SPHAEROIDES Solved by: NMR, Identified by HHSEARCH |
|
||||||||||||||||||||
|
1o70: NOVEL FOLD REVEALED BY THE STRUCTURE OF A FAS1 DOMAIN PAIRFROM THE INSECT CELL ADHESION MOLECULE FASCICLIN I Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH |
|
||||||||||||||||||||
|
1x3b: SOLUTION STRUCTURE OF THE FAS1 DOMAIN OF HUMAN TRANSFORMINGROWTH FACTOR-BETA INDUCED PROTEIN IG-H3 Solved by: NMR, Identified by HHSEARCH |
|
||||||||||||||||||||
|
2vxp: THE FOURTH FAS1 DOMAIN STRUCTURE OF HUMAN BIGH3 Solved by: X-RAY, Resolution: 2.5A, Identified by HHSEARCH |
|
Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.