SWISS-MODEL Repository - Model Details

Model Overview
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1
266

Sequence
UniProt O27280
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
NAD_binding_1
FAD_binding_6
DHODB_Fe-S_bind

Model 3D Structure
Model information:
Modelled residue range: 6 to 247
Based on template: [ 1ep1 ]  
Sequence Identity [%]: 24%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    6         VPEVLE IKRIVEESES VKTFIFSWD- FRREVRPGQF VMVWDFR---
1ep1B     2     sq--lqemmt vvsqrevayn ifemvlkgtl vdemdlpgqf lhlavpngam
                                                                      
TARGET              ssssss sssssss  s ssssssss           ss ssss      
1ep1B               ssssss sssssss  s ssssssss h hh      ss ssss      


TARGET    48    -DEKPMSVSL IDPVRSEIGI SIRRVG--EF TDRVHGLSEG DLLGIRGPYG
1ep1B     50    llrrpisiss wdkraktcti lyrigdettg tyklsklesg akvdvmgplg
                                                                      
TARGET             sssss s sss  sssss ssss     h hhhhh      sssssss   
1ep1B              sssss s sss  sssss ssss       hhhhh      sssssss   


TARGET    95    RGFE----LM GRDILLVGGG IGMAPLAALA DEATARGMRV DALVAARTAD
1ep1B     100   ngfpvaevts tdkiliiggg igvpplyela kqlektgcqm tillgfasen
                                                                      
TARGET                        sssssss  hhhhhhhhh hhhh    ss ssssss    
1ep1B                         sssssss  hhhhhhhhh hhhh    ss ssssss    


TARGET    141   ELLFLDRLE- AAGVNISTCT DDGSCGFKGF AHERLLTLEE NHDMAAVCGP
1ep1B     150   vkilenefsn lknvtlkiat ddgsygtkgh vgmlmneidf evdalytcga
                                                                      
TARGET              hhhh       ssssss s     sss   hhhhh        sssss  
1ep1B               hhhhh    ssssssss s     sss   hhhhh        sssss  


TARGET    190   EPMMFQVMRI LDERDVPAQL SLERYMKCAV GICGQCCLDD -----TGFRV
1ep1B     200   pamlkavakk ydqle-rlyi smesrmacgi gacyacvehd kedeshalkv
                                                                      
TARGET          hhhhhhhhhh       ssss ss              sss          sss
1ep1B           hhhhhhhhhh       ssss ss              sssss ss sssssss


TARGET    235   CAEGPVFWSQ ELS                                        
1ep1B     249   cedgpvflgk qlsl                                       
                                                                      
TARGET              sssss                                             
1ep1B               sssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: dc6ce1b82b35d85c3c1b82b28ec5e902 on BC2-cluster at Sun Aug 31 14:57:42 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>dc6ce1b82b35d85c3c1b82b28ec5e902
*****************************************************************************************
>1ep1B Evalue:4.2E-45 SeqID:24.710 Method:HHSEARCH Type:MODEL
--********************************************************************************-------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1ep1B          6              247            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: dc6ce1b82b35d85c3c1b82b28ec5e902 on gopt-54.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 14:59:59 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.