SWISS-MODEL Repository - Model Details

Model Overview
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1
718

Sequence
UniProt O27661
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Topoisom_bac
zf-C4_Topoisom
zf-C4_Topoisom
Toprim

Model 3D Structure
Model information:
Modelled residue range: 10 to 566
Based on template: [ 1cy0 ]  
Sequence Identity [%]: 24%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    10        EVIICE KPKSSEKIAG ALFPDAMKKK HGKVSYWEHV EGDKRVTIVS
1cy0A     2     gk--alvive spakaktink yl-------- ---------- -gs-dyvvks
                                                                      
TARGET              sssss   hhhhhhhh      sssss          ss sss ssssss
1cy0A               sssss   hhhhhhhh                            ssssss


TARGET    56    AVGHLYSLRP RQS-----NE EHFFDLEWAP IHEIDKKKGY VKDYLNVIRK
1cy0A     30    svghirdl-p alvnrmgvdp whnweahyev ---lpgk--- -ekvvselkq
                                                                      
TARGET          s                                hh           hhhhhhhh
1cy0A           s   sss     hhhhhsss      sss ss    s        hhhhhhh  


TARGET    101   FAAGADRYIH ACDYDIEGTL IGFNALKYGC GEEALRKTSR MKFSTLTREE
1cy0A     99    laekadhiyl atdldregea iawhlrevig gdd--arysr vvfneitkna
                                                                      
TARGET          hhhh  ssss s    hhhhh hhhhhhhhh        ssss s      hhh
1cy0A            hhh  ssss s    hhhhh hhhhhhhhh        ssss s      hhh


TARGET    151   IQRAYKNPIE VDYGQVDSGA ARHILDFIFG VNISRSLMKS VKAATNRFIK
1cy0A     147   irqafnkpge lnidrvnaqq arrfmdrvvg ymvspllwkk iar------g
                                                                      
TARGET          hhhhhh       hhhhhhhh hhhhhhhhhh hhhhhhhhhh           
1cy0A           hhhhhh       hhhhhhhh hhhhhhhhhh hhhhhhhhhh           


TARGET    201   LSAGRVQTPT LAILVEREKE IRDFKPVPYW IIRAELGE-- GIIAESKR--
1cy0A     191   lsagrvqsva vrlvverere ikafvpeefw evdastttps gealalqvth
                                                                      
TARGET              hhhhhh hhhhhhhhhh hhh   ssss sssssss       sss    
1cy0A               hhhhhh hhhhhhhhhh hhh   ssss ssssssss    sssssssss


TARGET    247   -----GKIFK RELVDSILEK CQGSDAEVKD VRVRDTIRKP PVPFDLGTLQ
1cy0A     241   qndkpfrpvn keqtqaavsl lekarysvle redkpttskp gapfitstlq
                                                                      
TARGET                      hhhhhhhhh hhh  sssss ssssssss        hhhhh
1cy0A           ss sss     hhhhhhhhhh hhh  sssss ssssssss        hhhhh


TARGET    292   SEAYRVFGFS PKKTQTIAQN LYTEGYTSYP RTSSQKLPES IGYEKILKNL
1cy0A     291   qaastrlgfg vkktmmmaqr lyeagyitym rtdstnlsqd a-vnmvrgyi
                                                                      
TARGET          hhhhhh     hhhhhhhhhh hhhh sss                  hhhhhh
1cy0A           hhhhhh     hhhhhhhhhh hhh  sss           hh h hhhhhhhh


TARGET    342   AKNPRFGVHI ERLRGPLKPH EGKKEDDAHP AIHPTGLL-- ---PSELSKD
1cy0A     340   sd--nfgkky lp-espnqya skensqeahe airpsdvnvm aeslkdmead
                                                                      
TARGET          h                                  sss               h
1cy0A           hh  h                              sss              hh


TARGET    387   EKKVYDLIVH RFISVFGEDA ILQTMKVELE IGEEEFSFSR KRVSKAGWME
1cy0A     387   aqklyqliwr qfvacqmtpa kydsttltvg agdfrlkarg rilrfdgwtk
                                                                      
TARGET          hhhhhhhhhh hhhh     s ssssssssss s  sssssss ssss      
1cy0A           hhhhhhhhhh hhhh     s ssssssssss s ssssssss ssss    hh


TARGET    437   SYPYTKMEDE EFPEISGGDS LAVRSVSADE RETKPPARYN EASLIRELER
1cy0A     437   vmi------- -lpavnkgda ltlveltpaq hftkpparfs easlvkelek
                                                                      
TARGET                             ss ssssssssss sss        hhhhhhhhhh
1cy0A                              ss ssssssssss sss        hhhhhhhhhh


TARGET    487   RGLGTKSTRA DIIAKLYDRK YIEGK--KIR VSPLGENIID TLTRYCEKII
1cy0A     489   rgigrpstya siistiqdrg yvrvenrrfy aekmgeivtd rleenfrelm
                                                                      
TARGET                  hh hhhhhhhh                hhhhhhhh hhhh   h  
1cy0A                   hh hhhhhhhh   sssss  sss sshhhhhhhh hhhh   h  


TARGET    535   SEELTRQFER ELEDIMRGKI SKDRVIDEAI TE -                 
1cy0A     539   nydftaqmen sldqvanhea ewkavldhff sdft                 
                                                                      
TARGET           hhhhhhhhh hhhhhh      hhhhhhhhh hh                   
1cy0A            hhhhhhhhh hhhhhh      hhhhhhhhh hhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: bdcd83a4d2aca3be0c68b588d7fbce9f on BC2-cluster at Mon Sep  1 07:09:12 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>bdcd83a4d2aca3be0c68b588d7fbce9f
********************************************************************************
>1cy0A Evalue:0 SeqID:24.913 Method:HHSEARCH Type:MODEL
-**--****-***********-***************************-*************-----------------
>2gaiA Evalue:0 SeqID:23.950 Method:HHSEARCH Type:MODEL
-**--****************-***************--*************************--****----------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1cy0A          10             566            HHSEARCH       BUILT          
2gaiA          11             634            HHSEARCH       NOT BUILT      

FINISHED PIPELINE ON ID: bdcd83a4d2aca3be0c68b588d7fbce9f on gopt-59.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 07:17:25 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.