SWISS-MODEL Repository - Model Details

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1
151

Sequence
UniProt O29139
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Lysine_decarbox

Model 3D Structure
Model information:
Modelled residue range: 5 to 144
Based on template: [ 2iz5 ]  
Sequence Identity [%]: 35%
Model date: 2008-07-09
Revision date: 2008-07-09

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-07-09. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    5          QIGVI GAGE--CDEE TYRIAYRVGE LIAEKGHVLI NGGL-GGVME
2iz5A     4     rkp--iigvm gpgkadtaen qlvmanelgk qiathgwill tggrslgvmh
                                                                      
TARGET                ssss          h hhhhhhhhhh hhhh   sss sss     hh
2iz5A             s  sssss         hh hhhhhhhhhh hhhh   sss sss     hh


TARGET    47    ASAKGAKSKG GLVVAILPRK KDLCNDFADI RIATDMGHAR NVIIVHSSDA
2iz5A     52    eamkgakeag gttigvlpgp -dtisdavdi pivtglg-ar dninalssnv
                                                                      
TARGET          hhhhhhh     ssssss             s ssss          hhhh  s
2iz5A           hhhhhhh     ssssss             s ssss         hhhhh  s


TARGET    97    LISVGGGYGT ISEIAIALKE GKRVASLKPP VVIEGMR--- ------VFET
2iz5A     103   lvavgmgpgt aaevalalka kkpvvllgtq peaekfftsl daglvhvaad
                                                                      
TARGET          sssss  hhh hhhhhhhhhh     sss    hhhh                 
2iz5A           sssss  hhh hhhhhhhhhh    ssss    hhhhhhhhhh    sssss  


TARGET    138   PEEAVNY -- ----                                       
2iz5A     153   vagaiaavkq llak                                       
                                                                      
TARGET           hhhhhh                                               
2iz5A           hhhhhhhhhh hhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 7c9432881e4cef7969112bb06df9c974 on BC2-cluster at Wed Jul  9 05:10:14 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>7c9432881e4cef7969112bb06df9c974
****************************************************************************
>2iz5A Evalue:1.6E-20 SeqID:35.526 Method:HHSEARCH Type:MODEL
--**********************************************************************----


TEMPLATE ID    START          STOP           METHOD         STATUS         
2iz5A          5              144            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 7c9432881e4cef7969112bb06df9c974 on gopt-62.cluster.bc2.ch BC2-Cluster at
Wed Jul  9 05:11:31 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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