SWISS-MODEL Repository
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
| UniProt | O32044 |
Database: TrEMBL (Unreviewed)  |
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Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2011-04-14. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
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Alignment
TARGET 2 LASKMRWE IQRPDQ-DKV KSLTEQLHIT PLVASLLVKR GFDTAESARL
2zxpA 1 mrdrvrwr vlslpplaqw revmaalevg peaalaywhr gfrrkedldp
TARGET sssss ss h hhhhhhh hhhhhhhhhh hh
2zxpA sssss ss hhhh hhhhhhh hhhhhhhhhh hh
TARGET 49 FLHTKDADFY DPFEMKGMKE AADRIKQAIS QQEKIMIYGD YDADGVTSTS
2zxpA 49 pla------- -llplkglre aaalleealr qgkrirvhgd ydadgltgta
TARGET hhh hhhhhhhhhh h sssssss hhhhhhhh
2zxpA hhh hhhhhhhhhh h sssssss hhhhhhhh
TARGET 99 VMLHTLQKLS AQVDFYIPDR FKEGYGPNEQ AFRSIKERGF SLIITVDTGI
2zxpA 91 ilvrglaalg advhpfipme rvpehl---- -------eas dlfltvdcgi
TARGET hhhhhhhh sssssss
2zxpA hhhhhhhh sssss hhhhhh h sssssss
TARGET 149 AAVHEAKVAK ELGLDVIITD HHEPGPELPD VRAIVHPKQP GCTYPFKELA
2zxpA 140 tnhaelrell engvevivtd hhtp-gktpp pglvvhpalt pdl--kekpt
TARGET hhhh sssss sss
2zxpA hhhh sssss sss
TARGET 199 GVGVAFKLAH ALL----GEL PDELLDLAAI GTIADLVPLH DENRLIATLG
2zxpA 187 gagvaflllw alherlglpp pleyadlaav gtiadvaplw gwnralvkeg
TARGET hhhhhhhhhh hh hhhhh hhhh hhhhhhhhh
2zxpA hhhhhhhhhh hhhhhh hhhhh hhhh hhhhhhhhh
TARGET 245 LERLRRTNRL GLKELIKLSG GDIGEANEET VGFQLAPRLN AVGRIEQADP
2zxpA 237 laripasswv glrllaeavg yt---gkave vafriaprin aasrlgeaek
TARGET hhhh h hhhhhhhh hh hhhhhhhhhh hhhh hh
2zxpA hhhh h hhhhhhhhh hh hh hhhhh hhhh hh
TARGET 295 AVHLLMSEDS FEAEELAAEI DQLNKERQKM VSKMTDEAIE MVEQQGLDQT
2zxpA 284 alrllltdda aeaqalvgel hrlnarrqtl eeamlrkllp qadp---eak
TARGET hhhhhh h hhhhhhhhhh hhhhhhhhhh hhhhhhhhh
2zxpA hhhhhh h hhhhhhhhhh hhhhhhhhhh hhhhhhhhh
TARGET 345 AIVVAKAGWN PGVVGIVASK LVDRFYRPAI VLGIDEEKGI AKGSARSIRG
2zxpA 331 aivlldpegh pgvmgivasr ileatlrpvf lvaq------ gkgtvrslap
TARGET sssss hhhhhhh hhh sss sss sssssss
2zxpA sssss hhhhhhh hhhh sss sss sssssss
TARGET 395 FNLFESLSEC RDILPHFGGH PMAAGMTLKA EDVPDLRSRL NEIADNTLTE
2zxpA 375 isavealrsa edlllryggh keaagfamde alfpafkarv eayaarfpd-
TARGET hhhhhh sssss sssssss hhhhhhh hhhh
2zxpA hhhhhh sssss sssssss hhhhhhh hhhhh
TARGET 445 EDFIPVQEVD LVCGVEDITV ESIAEMNMLS PFGMLNPKPH VLVENAVLED
2zxpA 424 --pvrevall dllpepgllp qvfrelalle pygegnpepl fllfgape-e
TARGET sssss h hhhhhhhh sssss
2zxpA sssss h hhhhhhhh sssss
TARGET 495 VRKIGANKTH VKMTIRNESS QLDCVGFNKG ELQEGIVPGS RISIVGEMSI
2zxpA 471 arrlge-grh lafrlkg--- -vrvlawkqg dl----alpp evevagllse
TARGET sssss sss sssss sssssss sssssssss
2zxpA sss ss sssss sssssss sssssssss
TARGET 545 NEWNNRKKPQ LMIKDAAVSE WQLFDLRGKR TWEDTVSALP SAKRAIVSFK
2zxpA 512 nawnghlaye vqavdlrkpe aleggiapfa yplplleala rarlgegvyv
TARGET sss sssss sssssss ss sss hhhhhh hhhh
2zxpA sss sssss sssssss ss sss hhhhhh hhhh
TARGET 595 EDSTTLLQTE DLRREVHVIS SKDQAKAFDL DGAYIVLLDP PPSLDMLARL
2zxpA 562 p--------- ---ednpegl dyaw------ ---kagfrll ppeeag----
TARGET sssss ss sss hhhh hhsss sss sssss
2zxpA hhhh hhhh s
TARGET 645 LEGKAPERIY FIFLNHEDHF LSTFPARDHF KWYYAFLLK- --RGAFDVKK
2zxpA 587 ---------- lwlglppr-- -pvlgrrvev algreararl sappvlhtpe
TARGET ssss s sss
2zxpA ss sss s
TARGET 692 HGSELAKHKG WSVETINFMT KVFFDL --- -----
2zxpA 624 arlkalvhrr llfayerrhp glfseallay wevnr
TARGET hhhhhhhhh hhhhhh h hhhhhh
2zxpA hhhhhhhhh hhhhh hh hhhhhhhhhh hh
no data available!
no data available!
Template Selection
- Start SMR-Pipeline for:f8745bbacf65ee122f5419038ce7fa14 on BC2-cluster at Thu Apr 14 22:18:38
2011
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
- Run HHSearch to detect more templates...
- Proof template(s) selection compared to previous Repository update
- Selected template(s): no changes compared to previous version of the Repository:
- Template: 2zxpA (2-717) Sequence Identity: 22.790
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:f8745bbacf65ee122f5419038ce7fa14 on BC2-cluster at Thu Apr 14 22:18:56
2011
Template Search
| Template Description |
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2zxp: Not available |
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3dev: Not available |
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3dma: Not available |
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.