SWISS-MODEL Repository - Model Details

Model Overview
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1
3343

Sequence
UniProt O35923
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
BRCA2
BRCA2
BRCA2
BRCA2
BRCA2
BRCA2
BRCA2
BRCA-2_OB1
BRCA-2_OB3
Tower
BRCA-2_helical

Model 3D Structure
Model information:
Modelled residue range: 2403 to 2785
Based on template: [ 1iyj ]  
Sequence Identity [%]: 95%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    2403    FPQFNKDL MSSLQNARDL QDIRIKNKER HHLCPQPGSL YLTKSSTLPR
1iyjD     2403    fpqfnkdl msslqnardl qdiriknker hhlcpqpgsl yltksstlpr
                                                                      
TARGET                   h hhhhhhhhhh hhhhhhh             h hhhhh     
1iyjD                    h hhhhhhhhhh hhhhhhh             h hhhhh     


TARGET    2451  ISLQAAVGDS VPSACSPKQL YMYGVSKACI SVNSKNAEYF QFAIEDHFGK
1iyjD     2451  islqaavgds vpsacspkql ymygvskaci svnsknaeyf qfaiedhfgk
                                                                      
TARGET            hhhhh                     hhh                       
1iyjD             hhhhh                     hhh                       


TARGET    2501  EALCAGKGFR LADGGWLIPS DDGKAGKEEF YRALCDTPGV DPKLISSVWV
1iyjD     2501  ealcagkgfr ladggwlips ddgkagkeef yralcdtpgv dpklissvwv
                                                                      
TARGET                  ss s   sss          hhhh hhhhhh            hhh
1iyjD                   ss s   sss          hhhh hhhhhh            hhh


TARGET    2551  SNHYRWIVWK LAAMEFAFPK EFANRCLNPE RVLLQLKYRY DVEIDNSSRS
1iyjD     2551  snhyrwivwk laamefafpk efanrclnpe rvllqlkyry dveidnssrs
                                                                      
TARGET          hhhhhhhhhh hhhhhhh            hh hhhhhhhhhh hhhhh     
1iyjD           hhhhhhhhhh hhhhhhh            hh hhhhhhhhhh hhhhh     


TARGET    2601  ALKKILERDD TAAKTLVLCV SDIISLSTNV SETSGSKASS EDSNKVDTIE
1iyjD     2601  alkkilerdd taaktlvlcv sdiisls--- ---------- ----kvdtie
                                                                      
TARGET          hhhhhhh        ssssss ssss    ss sssss  sss ssss   sss
1iyjD           hhhhhhh        ssssss ssss                         sss


TARGET    2651  LTDGWYAVKA QLDPPLLALV KSGRLTVGQK IITQGAELVG SPDACAPLEA
1iyjD     2651  ltdgwyavka qldppllalv ksgrltvgqk iitqgaelvg spdacaplea
                                                                      
TARGET          sss  sssss s  hhhhhhh hh      ss ssss  ssss s         
1iyjD           sss  sssss s  hhhhhhh hh      ss ssss  ssss s         


TARGET    2701  PDSLRLKISA NSTRPARWHS KLGFFHDPRP FPLPLSSLFS DGGNVGCVDV
1iyjD     2701  pdslrlkisa nstrparwhs klgffhdprp fplplsslfs dggnvgcvdv
                                                                      
TARGET            ssssss    sssss       sss                           
1iyjD             ssssss    sssss       sss                      sssss


TARGET    2751  IVQRVYPLQW VEKTVSGSYI FRNEREEEKE ALRFA ---- ----------
1iyjD     2751  ivqrvyplqw vektvsgsyi frnereeeke alrfsrdvst vwklrvtsyk
                                                                      
TARGET                   s ssss   sss ss hhhhh    h                   
1iyjD           ssssss  ss ssss   sss ss hhhhh    h    ssss sssssssss 


TARGET          ---------- ---------- ---------- ---------- ----------
1iyjD     2908  kreksallsi wrpssdlpsl ltegqryriy hlsvsksknk fewpsiqlta
                                                                      
TARGET                                                                
1iyjD                sssss ss   hhh       ssssss s                    


TARGET          ---------- ---------- ---------- ---------- ----------
1iyjD     2958  tkrtqyqqlp vssetllqly qprellpfsk lsdpafqppc sevdvvgvvv
                                                                      
TARGET                                                                
1iyjD               sssss     hh              hh            sss ssssss


TARGET          ---------- ---------- ---------- ---------- ----------
1iyjD     3008  svvkpiglap lvylsdeclh llvvkfgidl nedikprvli aasnlqwrpe
                                                                      
TARGET                                                                
1iyjD           sss        sssss        sssss             s sss sss   


TARGET          ---------- ---------- ---------- ---------- ----------
1iyjD     3058  stsrvptlfa gnfsvfsasp keahfqervt nmkhaienid tfykeaekkl
                                                                      
TARGET                                                                
1iyjD                sssss     sss       hhhhhhh hhh           hhhhhhh


TARGET          ----------                                            
1iyjD     3108  iqvlkgdspk                                            
                                                                      
TARGET                                                                
1iyjD           hhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 31c90d6bb530f7c027c47847de269ea7 on BC2-cluster at Fri Aug 29 20:49:11 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  3 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>31c90d6bb530f7c027c47847de269ea7
********************************************************************************
>1iyjD Evalue:0 SeqID:95.300 Method:BLAST Type:MODEL
---------------------------------------------------------*********--------------
>1miuA Evalue:0 SeqID:87.092 Method:BLAST Type:MODEL
---------------------------------------------------------*****-***********------
>1n0wB Evalue:3.45313e-06 SeqID:84.375 Method:BLAST Type:MODEL
------------------------------------*-------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1iyjD          2403           2785           BLAST          BUILT          
1miuA          2408           3112           BLAST          BUILT          
1n0wB          1505           1536           BLAST          BUILT          

FINISHED PIPELINE ON ID: 31c90d6bb530f7c027c47847de269ea7 on gopt-63.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 21:14:40 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.