SWISS-MODEL Repository - Model Details

Model Overview
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Sequence
UniProt O43103
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
AMP-binding
AMP-binding
AMP-binding
PP-binding
PP-binding
PP-binding
PP-binding
Condensation
Condensation
Condensation
Condensation

Model 3D Structure
Model information:
Modelled residue range: 249 to 778
Based on template: [ 1amu ]  
Sequence Identity [%]: 24%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    249                                    FEYFAATTPD ALALDFRFDL
1amuA     17    gtheeeqylf avnntkaeyp rdktihql-- feeqvskrpn nvaivce---
                                                                      
TARGET                                            hhhhhh    ssssss    
1amuA              hhhhhhh hh             hhhh   hhhhhhh    ssssss    


TARGET    269   QDLKSTKWSY AEMNQRAEKV KHLLWSHGVG SASSDPQADH IVALYLEKSP
1amuA     62    ----neqlty helnvkanql arifiekgig k-------dt lvgimmeksi
                                                                      
TARGET               sssss hhhhhhhhhh hhhhhhh             s sssss     
1amuA                sssss hhhhhhhhhh hhhhhhh             s sssss     


TARGET    319   ETYLSFIGVL KAGAAWCPID TDWPASRRQA LLAKSNAKIV LTHDDKISEQ
1amuA     101   dlfigilavl kaggayvpid ieypkeriqy ilddsqarml ltqkhlvh--
                                                                      
TARGET          hhhhhhhhhh hh  sssss       hhhhh hhhhh  sss ss  hh sss
1amuA           hhhhhhhhhh h   sssss       hhhhh hhhhh  sss ss     h  


TARGET    369   LRHDLESQLV KDKGEITAIR LDQLDAELSQ VQVVPPANAN RSIQQLAYMI
1amuA     149   ---lihniqf n--gqveife edtikire-g tnlhvp---- skstdlayvi
                                                                      
TARGET           sss           sssss    hhh          sss ss s   ssssss
1amuA              hh          sssss    hhh                     ssssss


TARGET    419   WTSGTTGLPK GVGIQHLAII QAMRALRIYI PYGKDKIGTD QIRYLQYSAY
1amuA     189   yts-----pk gtmlehkgis nlkvffensl nvt------e kdrigqfasi
                                                                      
TARGET          ss       s sssssshhhh hhhhhhhh               sssss    
1amuA           ss       s sssssshhhh hhhhhhhhh              sssss    


TARGET    469   NFDLSIMDCF YTWGLGGTIC SCPRGVLLQ- -DLVEVGNSL QPTHTLLTPA
1amuA     233   sfdasvwemf malltgasly iilkdtindf vkfeqyinqk eitvitlppt
                                                                      
TARGET             hhhhhhh hhh    sss s  hhhh       hhhhhhh   sssss hh
1amuA              hhhhhhh hhh    sss ss hhh   h hhhhhhhhhh   sssss hh


TARGET    517   VMAMTERHRV PSLKVVISGG EKLSQVVADE WSKDCCLLNL YGPAEATLIA
1amuA     283   yvvhldperi lsiqtlitag satspslvnk wkekvtyina ygptettica
                                                                      
TARGET          hhh           ssssss      hhhhhh      sssss s   sss  s
1amuA           hhh           ssssss      hhhhhh      sssss s   sss  s


TARGET    567   MNRRVPFGDR VKAPNIGVAL PTVSCHALDK YDQIVIKGAV GELVLGGPQL
1amuA     333   ttwvatketi ghsvpigapi qntqiyivde nlqlksvgea gelciggegl
                                                                      
TARGET          sssss             sss    ssssss    sss      ssssss  ss
1amuA           sssss             sss  ssssssss    sss      ssssssssss


TARGET    617   ARGYVGDPVK TADKFFPHPQ L--GRVYRTG DLVRQLDNQE FEYLGRIDDQ
1amuA     383   argywkrpel tsqkfvdnpf vpgeklyktg dqarwlsdgn ieylgridnq
                                                                      
TARGET          s sss  hhh hhhsssss      sssssss ssssss   s sssssss ss
1amuA           s sss  hhh hhhsssss      sssssss ssssss   s sssssss ss


TARGET    665   VKINGIRIEL LEINAAIKNS HDKIKDSETM AFSKKDNESE QQIINFSALP
1amuA     433   vkirghrvel eevesil-lk hmyiset--a vsvhkdhqeq pylcayfv-s
                                                                      
TARGET          sss  sssss hhhhhh              s ssssss   s sssssssss 
1amuA           sss  sssss hhhhhhh h       ss  s ssssss   s ssssssss  


TARGET    715   GGEPGQLLRT DQDAIAVARE LQANAKDSLP SYMVPNLFVI LSHFPRTSSA
1amuA     479   ekhi------ ------pleq lrqfsseelp tymipsyfiq ldkmpltsng
                                                                      
TARGET              sssss   sssss  hh hhhhhhhh         ssss s   sss   
1amuA                             hhh hhhhhhhh         ssss s   sss   


TARGET    765   KIDRVALKNV LASF                                       
1amuA     517   kidrkqlpep dltf-                                      
                                                                      
TARGET          sss                                                   
1amuA           sss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 1be8739e80f385905bfc609732d9ba87 on BC2-cluster at Mon Sep  1 02:26:24 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>1be8739e80f385905bfc609732d9ba87
*********************************************************************************
>1amuA Evalue:0 SeqID:24.906 Method:HHSEARCH Type:MODEL
-----**********------------------------------------------------------------------
>1md9A Evalue:0 SeqID:19.656 Method:HHSEARCH Type:MODEL
----------------------------**********-------------------------------------------
>2jgpA Evalue:0 SeqID:14.361 Method:HHSEARCH Type:MODEL
----------------*-*********------------------------------------------------------
>2jgpA Evalue:5E-43 SeqID:17.910 Method:HHSEARCH Type:MODEL
--------------------------------------**********---------------------------------
>2fq1A Evalue:2.3E-05 SeqID:16.667 Method:HHSEARCH Type:MODEL
-----------------------------------------------------------**--------------------
>2fq1A Evalue:9.6E-05 SeqID:18.584 Method:HHSEARCH Type:MODEL
---------------**----------------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1amuA          249            778            HHSEARCH       BUILT          
1md9A          1423           1925           HHSEARCH       BUILT          
2jgpA          795            1356           HHSEARCH       NOT BUILT      
2jgpA          1946           2464           HHSEARCH       BUILT          
2fq1A          3022           3087           HHSEARCH       BUILT          
2fq1A          761            872            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 1be8739e80f385905bfc609732d9ba87 on gopt-70.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 03:00:36 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.