SWISS-MODEL Repository - Model Details

Model Overview
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Sequence
UniProt O43103
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
AMP-binding
AMP-binding
AMP-binding
PP-binding
PP-binding
PP-binding
PP-binding
Condensation
Condensation
Condensation
Condensation

Model 3D Structure
Model information:
Modelled residue range: 761 to 872
Based on template: [ 2fq1 ]  
Sequence Identity [%]: 18%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

                                                       
2fq1A     5     klqayalpes hdipqnkvdw afepqraall ihdmqdyfvs fwgencpmme
                                                                      
                                                       
2fq1A                                      sssss sssssshh         hhhh


                                                       
2fq1A     55    qvianiaalr dyckqhnipv yytaqpkeqs dedrallndm wgpgltrspe
                                                                      
                                                       
2fq1A           hhhhhhhhhh hhhhh   ss ssss       hhh   hhhh           


                                                       
2fq1A     105   qqkvvdrltp daddtvlvkw rysafhrspl eqmlkesgrn qliitgvyah
                                                                      
                                                       
2fq1A             sss          sssss           h hhhhhhh  s sssssss   


TARGET    761                                TSS AKIDRVALKN VLASFDQLDW
2fq1A     155   igcmttatda fmrdikpfmv adala--dfs rdehlmslky vagrsg----
                                                                      
TARGET                                           hhhhhhhhhh hhh       
2fq1A            hhhhhhhhh hh   sssss s          hhhhhhhhhh hhh       


TARGET    784   ENKLANEGDD DQVDPATAQ- AEACLRKWLA KLCNVDASKI GRKTPFTSVG
2fq1A     199   -----rvvmt eellpapipa skaalrevil plldesd-ep fdddnlidyg
                                                                      
TARGET                     hh           hhhhhhhh h                    
2fq1A                sss   hh          hhhhhhhhh h                hh  


TARGET    833   LDSIRAMMFS KRVSEEGFAV SVLDVARFPT LKSLGEHLQS           
2fq1A     243   ldsvrmmala arwrkvhgdi dfvmlaknpt idawwkllsr e         
                                                                      
TARGET             hhhhhhh hhhhhh      hhhhh     hhhhhhhh             
2fq1A              hhhhhhh hhhhhh      hhhhh     hhhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 1be8739e80f385905bfc609732d9ba87 on BC2-cluster at Mon Sep  1 02:26:24 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>1be8739e80f385905bfc609732d9ba87
*********************************************************************************
>1amuA Evalue:0 SeqID:24.906 Method:HHSEARCH Type:MODEL
-----**********------------------------------------------------------------------
>1md9A Evalue:0 SeqID:19.656 Method:HHSEARCH Type:MODEL
----------------------------**********-------------------------------------------
>2jgpA Evalue:0 SeqID:14.361 Method:HHSEARCH Type:MODEL
----------------*-*********------------------------------------------------------
>2jgpA Evalue:5E-43 SeqID:17.910 Method:HHSEARCH Type:MODEL
--------------------------------------**********---------------------------------
>2fq1A Evalue:2.3E-05 SeqID:16.667 Method:HHSEARCH Type:MODEL
-----------------------------------------------------------**--------------------
>2fq1A Evalue:9.6E-05 SeqID:18.584 Method:HHSEARCH Type:MODEL
---------------**----------------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1amuA          249            778            HHSEARCH       BUILT          
1md9A          1423           1925           HHSEARCH       BUILT          
2jgpA          795            1356           HHSEARCH       NOT BUILT      
2jgpA          1946           2464           HHSEARCH       BUILT          
2fq1A          3022           3087           HHSEARCH       BUILT          
2fq1A          761            872            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 1be8739e80f385905bfc609732d9ba87 on gopt-70.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 03:00:36 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.