SWISS-MODEL Repository 
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2013-01-30. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
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Alignment
TARGET 1 KIPPRWLN CPRRGQPVAG RFLPLKTMLG PRYDSQVAEE NRFHPSMLSN
1i9tA 5 kipprwln cprrgqpvag rflplktmlg prydsqvaee nrfhpsmlsn
TARGET sss ssssss hh hhhhh
1i9tA sss sssssss hh hhhhh
TARGET 49 YLKSLKVKMS LLVDLTNTSR FYDRNDIEKE GIKYIKLQCK GHGECPTTEN
1i9tA 53 ylkslkvkms llvdltntsr fydrndieke gikyiklqck ghgecptten
TARGET hhhhh s sssss hhhhh sssss hhh
1i9tA hhhhh s sssss hhhhh sssss hhh
TARGET 99 TETFIRLCER FNERSPPELI GVHCTHGFNR TGFLICAFLV EKMDWSIEAA
1i9tA 103 tetfirlcer fnersppeli gvh-thgfnr tgflicaflv ekmdwsieaa
TARGET hhhhhhhhh s sss hh hhhhhhhhhh h hhhh
1i9tA hhhhhhhhh s sss s hh hhhhhhhhhh hh hhhh
TARGET 149 VATFAQARPP GIYKGDYLKE LFRRYGDIEE APPPPVLPDW CF
1i9tA 153 vatfaqarpp giykgdylke lfrrygdiee appppvlpdw cf-
TARGET hhhhhhh hhhhhh hhhh
1i9tA hhhhhhh hhhhhh hhhh
Template's ligands section
Ligands in the template:ALA : 1,CAC : 1,IPA : 2,SO4 : 1.
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page.
No ligands were included in the model.
Quaternary Structure Annotation of the Template
1i9t is annotated as MONOMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 1i9t.pdb1.gz
Quaternary Structure Modelling of the Target Protein
Analysis of evolutionary and family specific aspects revealed non-conservation of the oligomeric structure
Hence, the oligomeric structures of the target and the template cannot be assumed to be similar (=MONOMER)
The target structure was calculated as SINGLE CHAIN
The corresponding reliability score is 0.306 (>0.5 indicates similarity)
Template Selection
- Start SMR-Pipeline for:bfefeb893ec342be655341f3ef1651cb on BC2-cluster at Fri Feb 22 16:29:52
2013
- Analyze BLAST summary ...
- Blast template search was successfull, number of templates selected for modeling: 3 go for
modeling ...
- No template with C found
- Proof template(s) selection compared to previous Repository update
- Different number of templates selected (old0 vs new:3): model based on new templates
- Send 3 Templates for modeling
- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
- *************************
- building model based on 1i9tA (5-194) was successful
- ********************************
- building model based on 3rtxA (226-466) was successful
- *********************************************
- building model based on 3s24F (229-565) was successful
- Repository Pipeline parameter
Cut-off parameters to model the target based on a BLAST target-template alignment
Evalue : 0.0001
Minimum Template size (aa) for ranking : 25
Minimum Sequence identity : 60
Cut-off parameters to model the target based on a HHSearch target-template alignment
Evalue : 0.0001
Probability : 50
MAC : 0.3
Parameters for model selection
Minimal number of uncovered target
residues after BLAST to run HHSEARCH : 50
Minimal number of uncovered target
residues to model an additional template : 25
- Finish SMR-Pipeline for:bfefeb893ec342be655341f3ef1651cb on BC2-cluster at Fri Feb 22 16:31:52
2013
Template Search
| Template Description |
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1i9t: CRYSTAL STRUCTURE OF THE OXIDIZED RNA TRIPHOSPHATASE DOMAIOF MOUSE MRNA CAPPING ENZYME Solved by: X-RAY, Resolution: 1.70A, Identified by BLAST |
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1i9s: CRYSTAL STRUCTURE OF THE RNA TRIPHOSPHATASE DOMAIN OF MOUSMRNA CAPPING ENZYME Solved by: X-RAY, Resolution: 1.65A, Identified by BLAST |
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3rtx: CRYSTAL STRUCTURE OF MAMMALIAN CAPPING ENZYME (MCE1) AND PCOMPLEX Solved by: X-RAY, Resolution: 2.81A, Identified by BLAST |
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2c46: CRYSTAL STRUCTURE OF THE HUMAN RNA GUANYLYLTRANSFERASE AND5'-PHOSPHATASE Solved by: X-RAY, Resolution: 1.60A, Identified by BLAST |
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3s24: CRYSTAL STRUCTURE OF HUMAN MRNA GUANYLYLTRANSFERASE Solved by: X-RAY, Resolution: 3.01A, Identified by BLAST |
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.