SWISS-MODEL Repository - Model Details

Model Overview
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Sequence
UniProt O57409
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
O57409: 7955.ENSDARP0000

Domain
Link to: [ InterPro ]
EGF
EGF
EGF
EGF
EGF
EGF
DSL
MNNL

Model 3D Structure
Model information:
Modelled residue range: 161 to 309
Based on template: [ 2vj2 ]  
Sequence Identity [%]: 53%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    161     CDEFYFGE ACSDYCRPRD DTLGHYTCDE NGNKECLVGW QGDYCSDPIC
2vj2A     187     cddyyygf gcnkfcrprd dffghyacdq ngnktcmegw mgpecnraic
                                                                      
TARGET               sss      sss  ss s  ssssss    sssss ss s     sss 
2vj2A                sss      sss  ss s  ssssss    sssss ss s     sss 


TARGET    209   SSDCSERHGY CESPGECKCR LGWQGPSCSE CVHYPGCLHG TCSQPWQCVC
2vj2A     235   rqgcspkhgs cklpgdcrcq ygwqglycdk ciphpgcvhg icnepwqclc
                                                                      
TARGET                 sss        sss  sss     s ss      ss s       ss
2vj2A                  sss        sss  sss     s ss      ss s       ss


TARGET    259   KEGWGGLFCN QDLNYCTNHK PCANGATCTN TGQGSYTCTC RPGFGGTNCE
2vj2A     285   etnwggqlcd kdlnycgthq pclnggtcsn tgpdkyqcsc pegysgpnce
                                                                      
TARGET          s sss      sss hhhh         ssss s   sssss            
2vj2A           s              hhhh         ssss s   sssss            


TARGET    309   L                                                     
2vj2A     335   i-                                                    
                                                                      
TARGET                                                                
2vj2A

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 2eaad8039866b9670077203a51dd7d1a on BC2-cluster at Sat Aug 30 04:14:33 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>2eaad8039866b9670077203a51dd7d1a
*****************************************************************************
>2vj2A Evalue:4.3E-30 SeqID:53.691 Method:HHSEARCH Type:MODEL
--------------------*******************--------------------------------------
>1tozA Evalue:8E-20 SeqID:35.345 Method:HHSEARCH Type:MODEL
---------------------------------------**************------------------------
>1fsbA Evalue:1E-07 SeqID:30.769 Method:HHSEARCH Type:MODEL
----------------------------------------------------------*****--------------
>1bf9A Evalue:1.6E-07 SeqID:43.590 Method:HHSEARCH Type:MODEL
-----------------------------------------------------*****-------------------
>1tozA Evalue:6.2E-22 SeqID:37.288 Method:HHSEARCH Type:MODEL
---------------------------------***************-----------------------------
>1uzjA Evalue:6.5E-15 SeqID:21.341 Method:HHSEARCH Type:MODEL
----------------------------------*******************------------------------
>1uzjA Evalue:8.9E-15 SeqID:20.779 Method:HHSEARCH Type:MODEL
---------------------------------------******************--------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2vj2A          161            309            HHSEARCH       BUILT          
1tozA          310            423            HHSEARCH       BUILT          
1fsbA          465            503            HHSEARCH       BUILT          
1bf9A          424            462            HHSEARCH       BUILT          
1tozA          269            385            HHSEARCH       BUILT          
1uzjA          270            423            HHSEARCH       BUILT          
1uzjA          310            456            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 2eaad8039866b9670077203a51dd7d1a on gopt-30.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 04:27:31 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.