SWISS-MODEL Repository - Model Details

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1
494

Sequence
UniProt O57682
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
PAX
Pax2_C
Pax2_C

Model 3D Structure
Model information:
Modelled residue range: 18 to 141
Based on template: [ 1k78 ]  
Sequence Identity [%]: 96%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    18      GVNQLGGV FVNGRPLPDV VRQRIVELAH QGVRPCDISR QLRVSHGCVS
1k78E     19      gvnqlggv fvngrplpdv vrqrivelah qgvrpcdisr qlrvshgcvs
                                                                      
TARGET            sss   ss s       hh hhhhhhhhhh h   hhhhhh hh   hhhhh
1k78E             sss   ss s       hh hhhhhhhhhh h   hhhhhh hh   hhhhh


TARGET    66    KILGRYYETG SIKPGVIGGS KPKVATPKVV DKIADYKRQN PTMFAWEIRD
1k78E     67    kilgryyetg sikpgviggs kpkvatpkvv ekiaeykrqn ptmfaweird
                                                                      
TARGET          hhhhhhhh                    hhhh hhhhhhhhh      hhhhhh
1k78E           hhhhhhhh                    hhhh hhhhhhhhh      hhhhhh


TARGET    116   RLLAEGICDN DTVPSVSSIN RIIRTK                          
1k78E     117   rllaervcdn dtvpsvssin riirtk-                         
                                                                      
TARGET          hhhh            hhhhh hhhh                            
1k78E           hhhh            hhhhh hhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 6cb0c1b8a95c04de5655d83b9e2f4843 on BC2-cluster at Sun Aug 31 04:36:31 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>6cb0c1b8a95c04de5655d83b9e2f4843
***********************************************************************************
>1k78E Evalue:7.21965e-66 SeqID:96.774 Method:BLAST Type:MODEL
---*********************-----------------------------------------------------------
>1ic8A Evalue:5.8E-14 SeqID:8.929 Method:HHSEARCH Type:MODEL
---------------*********-*------***********----------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1k78E          18             141            BLAST          BUILT          
1ic8A          92             255            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 6cb0c1b8a95c04de5655d83b9e2f4843 on ms-3.cluster.bc2.ch BC2-Cluster at Sun
Aug 31 04:42:01 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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