SWISS-MODEL Repository - Model Details

Model Overview
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1
375

Sequence
UniProt O59828
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Ala_racemase_C
Ala_racemase_N

Model 3D Structure
Model information:
Modelled residue range: 1 to 374
Based on template: [ 2rjg ]  
Sequence Identity [%]: 42%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1       MRGAKSVI DLHAIAHNYN VAKQMMLQKN PSGHVLAIVK ANAYGHGAVQ
2rjgA     1       mqaatvvi nrralrhnlq rlrela---- paskmvavvk anayghglle
                                                                      
TARGET                ssss sshhhhhhhh hhhhhh        ssssss         hhh
2rjgA                sssss sshhhhhhhh hhhhh         ssssss         hhh


TARGET    49    VARFLLKHCS SIDGFGVSSI EEALELRHGG IYNKIVLLEG FFTEEDELKL
2rjgA     45    tartlpd--- -adafgvarl eealrlragg itkpvllleg ffda-rdlpt
                                                                      
TARGET          hhh           ssss    hhhhhhhhh     sssss          hhh
2rjgA           hhh           ssss    hhhhhhhhh     sssss        hhhhh


TARGET    99    IDDYNFSIII HSEDQVNSFI KYPFNRPVEI WLKLDSGMNR LGFTPSQFMK
2rjgA     90    isaqhfhtav hneeqlaale easldep-vt vwmldtgmhr lgvrpeqaea
                                                                      
TARGET          hhhh  ssss   hhhhhhh           s sss               hhh
2rjgA           hhhh  ssss   hhhhhhhh          s sss               hhh


TARGET    149   FYNLLSNNKN V-SNIGKITH FAFADMLENP EHTLKQWDIF EKSVAHLPGP
2rjgA     140   fyhrltqckn vrqpvnivsh faradep-kc gatekqlaif ntfcegkpgq
                                                                      
TARGET          hhhhhh          ssss              hhhhhhhhh hhhh     s
2rjgA           hhhhhh          ssss              hhhhhhhhh hhhh     s


TARGET    198   LSAGGSAIIL GWLNTVCTDW LRAGIMLYGI SPFLSKNKDS KTPESVNIKP
2rjgA     189   rsiaasggil lwpq-shfdw vrpgiilygv sple----dr stgadfgcqp
                                                                      
TARGET          ss   hhhhh h       ss sss                             
2rjgA           ss   hhhhh    h h  ss sss  hh                         


TARGET    248   AMKLVSTIIS VKHVDKGQPI GYGGRYVATR DMKLGVVAMG YGDGFPRQVK
2rjgA     234   vmsltsslia vrehkagepv gyggtwvser dtrlgvvamg ygdgypraap
                                                                      
TARGET          ssssssssss ssss   sss ss sssss    sssssssss s         
2rjgA           ssssssssss ssss   sss ss sssss    sssssssss s         


TARGET    298   DGCPVLVNGV KAPIVGRVSM DMLTVDLSDI PDVKPGDEVI FWGTPELTVA
2rjgA     284   sgtpvlvngr evpivgrvam dmicvdlgpq aqdkagdpvi lwg-eglpve
                                                                      
TARGET            ssssss s sssss   ss sssssss          ssss s        h
2rjgA             ssssss s sssss   ss sssssss          ssss s        h


TARGET    348   DIAKYCSDTS PYELVTKLTR RVPLQYT                         
2rjgA     333   riaem-tkvs ayelitrlts rvamkyvd                        
                                                                      
TARGET          hhhhh      hhhhhh       sssss                         
2rjgA           hhhhh h    hhhhhh       sssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 1ae68599ab078a4605e1472846fb8162 on BC2-cluster at Fri Aug 29 21:16:06 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>1ae68599ab078a4605e1472846fb8162
***************************************************************************
>2rjgA Evalue:0 SeqID:42.400 Method:HHSEARCH Type:MODEL
*****-*****-**********************************-****************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
2rjgA          1              374            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 1ae68599ab078a4605e1472846fb8162 on gopt-61.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 21:20:03 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.