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SWISS-MODEL Repository - Model Details

Model Overview

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454

Sequence

UniProt

O65041

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING

O65041: 3702.AT5G19180.1

Domain

Link to: [ InterPro ]

	ThiF
	UBACT
	E2_bind
	UBA_e1_thiolCys

Model 3D Structure

	Model information:
	Modelled residue range:	18 to 406
	Based on template:	[ 2nvu ]
	Sequence Identity [%]:	48%
	Model date:	2013-02-19
	Revision date:	2013-01-30

Quaternary structure information:	[details]
Template (2nvu): HETERO PENTAMER Model built :SINGLE CHAIN

Ligand information:	[details]
Ligands in the template: ATP: 1, MG: 1, ZN: 1. Ligands in the model: ZN: 1

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]

Alignment


                                                       
2nvuB     1002  kieegklviw ingdkgyngl aevgkkfekd tgikvtvehp dkleekfpqv
                                                                      
                                                       
2nvuB                 ssss s      hhh h      hhh    sssss     hhhhhhhh


                                                       
2nvuB     1052  aatgdgpdii fwahdrfggy aqsgllaeit pdkafqdkly pftwdavryn
                                                                      
                                                       
2nvuB           h      sss sssshhhhhh hhh sss      hhhhhsss  hhhh     


                                                       
2nvuB     1102  gkliaypiav ealsliynkd llpnppktwe eipaldkelk akgksalmfn
                                                                      
                                                       
2nvuB                sssss s  sssss            h hhhhhhhhhh hh        


                                                       
2nvuB     1152  lqepyftwpl iaadggyafk yengkydikd vgvdnagaka gltflvdlik
                                                                      
                                                       
2nvuB               hhhhhh hhh      s ss  sss         hhhhh hhhhhhhhhh


                                                       
2nvuB     1202  nkhmnadtdy siaeaafnkg etamtingpw awsnidtskv nygvtvlptf
                                                                      
                                                       
2nvuB                    h hhhhhhhhh    sssss         h       sss     


                                                       
2nvuB     1252  kgqpskpfvg vlsaginaas pnkelakefl enylltdegl eavnkdkval
                                                                      
                                                       
2nvuB                    s ssssssss      hhhhhhh h      hhh hhhhh   ss


                                                       
2nvuB     1306  ksyeeeatme naqkgeimpn ipqmsafwya vrtavinaas grqtvdaala
                                                                      
                                                       
2nvuB           shhh    hh hhhh         hhhhhhhh hhhh           hhhhhh


TARGET    1                        LD KLLLRHGNLV DPGFVPGPGL RDDIRDYVRI
2nvuB     1364  aaqtnaaadw egrwnh--vk kflersgpft hpdfepstes lqflldtckv
                                                                      
TARGET                                hhh                hh hhhhhh   s
2nvuB           hhhhh          hh  hh hhh                hh hhhhhh   s


TARGET    33    LVIGAGGLGC ELLKDLALSG FRNLEVIDMD RIEVTNLNRQ FLFRIEDVGK
2nvuB     2052  lvigagglgc ellknlalsg frqihvidmd tidvsnlnrq flfrpkdigr
                                                                      
TARGET          ssss    hh hhhhhhh     sssssss s ss  hhh             s
2nvuB           ssss    hh hhhhhhh     sssssss s ss  hhh             s


TARGET    83    PKAEVAAKRV MERVSGVEIV PHFSRIEDKE IEFYNDFNII ALGLDSIEAR
2nvuB     2102  pkaevaaefl ndrvpncnvv phfnkiqdfn dtfyrqfhii vcgldsiiar
                                                                      
TARGET          sshhhhhhhh hhh    sss ssss        hhhh   ss sss    hhh
2nvuB           sshhhhhhhh hhh    sss ssss        hhhh   ss sss    hhh


TARGET    133   KYINGVACGF LEYNEDDTPK RETIKPMVDG GTEGFKGHAR VILPGVTPCF
2nvuB     2152  rwingmlisl lny-edgvld pssivplidg gtegfkgnar vilpgmtaci
                                                                      
TARGET          hhhhhhhhh                  sssss sss ssssss ss        
2nvuB           hhhhhhhhh   ss s  sss      sssss sss ssssss ss        


TARGET    183   ECTIYLFPPQ VKFPLCTLAE TPRNAAHCIE YAHLIQW--- ETVHRGKTFD
2nvuB     2201  ectlelyppq vnfpmctias mprlpehcie yvrmlqwpke qpfgegvpld
                                                                      
TARGET          h   h          hhhhh       hhhhh hhhh                 
2nvuB           h   h          hhhhh       hhhhh hh   hhhh            


TARGET    230   PDEPEHMKWV YDEAIRRAEL FGIPGVTYSL TQGVVKNIIP AIASTNAIIS
2nvuB     2251  gddpehiqwi fqkslerasq ynirgvtyrl tqgvvkriip avastnavia
                                                                      
TARGET             hhhhhhh hhhhhhhhh         hhh hhhhhh        hhhhhhh
2nvuB              hhhhhhh hhhhhhhhh         hhh hhhhhh        hhhhhhh


TARGET    280   AACALETLKI VSACSKTLVN YLTYNGGEGL YTEVTKFERD TECLVCGPG-
2nvuB     2301  avcatevfki atsayiplnn ylvfndvdgl ytytfeaerk encpacsqlp
                                                                      
TARGET          hhhhhhhhhh h        s ssssss     sssss                
2nvuB           hhhhhhhhhh h        s ssssss     sssss                


TARGET    329   ILIELDTSVT LSKFIEMLED HPKLLLSKAS VKQG---ENT L-YMQAPPVL
2nvuB     2351  qniqfspsak lqevldyltn saslqmkspa itatlegknr tlylqsvtsi
                                                                      
TARGET                      hhhhhhhhh                              hhh
2nvuB           sssss       hhhhhhhhh          s sssss  sss ss     hhh


TARGET    375   EEFHRPKLSK PLYDL ---- ---------- ---------- --        
2nvuB     2401  eertrpnlsk tlkelglvdg qelavadvtt pqtvlfklhf ts        
                                                                      
TARGET          hhhhhhh     hhh                                       
2nvuB           h   hhh     hhh       ssssss        sssssss s

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Ligands in the template: ATP: 1, MG: 1, ZN: 1. 
Ligands in the template that will be assessed: ATP103, MG101, ZN102. 
Model's ligands section 
ATP103 
ATP103 interacts, within a radius of 3 Angstroem, with the following ions: MG101. They will be considered as a single ligand. 
Not all the residues interacting with the ligand are completely conserved between model and template. 
No RMSD calculation will be performed. 
Given the properties calculated previously, the ligand ATP103 will not be included in the model. 
ATP103: conservation:False, RMSD:False, included: False 
 
ZN102 
All the residues interacting with the ligand are completely conserved between model and template. 
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.050 
Given the properties calculated previously, the ligand ZN102 will be included in the final model. 
ZN102: conservation:True, RMSD:True, included: True 
 
The new model with the included ligands was saved successfully.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template
2nvu is annotated as HETERO PENTAMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 2nvu.pdb1.gz

Quaternary Structure Modelling of the Target Protein
2nvu_1

Template Selection

 - Start SMR-Pipeline for:ce8325fca4a79908820ed2bb664b2ba0 on BC2-cluster at Tue Feb 19 09:02:58
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with D found
 - No template with B found
 - No template with D found
 - No template with B found
 - No template with A found
 - No template with C found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with C found
 - No template with J found
 - No template with E found
 - No template with K found
 - No template with A found
 - No template with I found
 - No template with G found
 - No template with L found
 - No template with G found
 - No template with L found
 - No template with C found
 - No template with J found
 - No template with E found
 - No template with K found
 - No template with A found
 - No template with I found
 - No template with 2 found
 - No template with 4 found
 - No template with D found
 - No template with D found
 - No template with A found
 - No template with D found
 - No template with B found
 - No template with D found
 - No template with C found
 - No template with A found
 - No template with D found
 - No template with B found
 - No template with A found
 - No template with I found
 - No template with C found
 - No template with J found
 - No template with Y found
 - No template with Z found
 - No template with Y found
 - No template with Z found
 - No template with C found
 - No template with J found
 - No template with A found
 - No template with I found
 - No template with G found
 - No template with L found
 - No template with E found
 - No template with K found
 - No template with A found
 - No template with D found
 - No template with B found
 - No template with D found
 - No template with A found
 - No template with I found
 - No template with C found
 - No template with J found
 - No template with K found
 - No template with E found
 - No template with L found
 - No template with G found
 - No template with A found
 - No template with I found
 - No template with C found
 - No template with J found
 - No template with E found
 - No template with K found
 - No template with G found
 - No template with L found
 - No template with D found
 - No template with D found
 - No template with D found
 - No template with D found
 - No template with H found
 - No template with E found
 - No template with F found
 - No template with A found
 - No template with E found
 - No template with C found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with D found
 - No template with F found
 - No template with A found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with B found
 - No template with A found
 - No template with C found
 - No template with I found
 - No template with J found
 - No template with C found
 - No template with D found
 - No template with C found
 - No template with D found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -    *********************************************************************
 - building model based on 2nvuB (18-406) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:ce8325fca4a79908820ed2bb664b2ba0 on BC2-cluster at Tue Feb 19 09:08:04
2013

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

3rui: CRYSTAL STRUCTURE OF ATG7C-ATG8 COMPLEX
Solved by: X-RAY, Resolution: 1.91A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

40-216

3ruiA

21%

[Model]

3vh1: CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE ATG7 (1-595)
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

41-346

3vh1A

16%

>target----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDIRDYVRILVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRI--------------ED--KEIEFYNDFNIIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVILPGVTPCFECTIYLFPPQVKFPLCTLAETPRNAAHCIEYAHLIQWETVHRGKTFDPDEPEHMKWVYDEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSKTLV-----NYL--TYNGGE-GLYTEVTKFERDTECLVCGPGI------------------->3vh1ASERVLSYAPAFKSFLDTSFFQELSRLKLDTCQPLTVNLDLHNIPKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWEDGIKDINKCVSFVIISFADLKKYRFYYWLGVPCFQRPSSTVLHVRPEPSLKGLFSKCQKWFDVNYSKWVCILDADDEIVNYDKCIIRKTKVLAIRDTSTMENVPSALTKNFLSVLQYDVPDLIDFKLLIIRQNEGSFALNATFASIDPDMKVSGWERNVQGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILPDLNLDII-KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIE-------------NKTVINAA-LGFDSYL-VMRHGQLGCYFCHDVVAPTDSLTDRT--------L----------------------------------------------------DQMC-TVTRPGV----AMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSPKVIEAFTDLGWEFVKKALEHP

[Model]

4gsk: CRYSTAL STRUCTURE OF AN ATG7-ATG10 CROSSLINKED COMPLEX
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	41-346	4gskB	16%	>target -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDIRDYVRILVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRI------------E--D--KEIEFYNDFNIIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVIL-PGVTPCFECTIYLFPPQVKFPLCTLAETPRNAAHCIEYAHLIQWETVHRGKTFDPDEPEHMKWVYDEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSKT---------LVNYLTYNGGEGLYTEVTKFERDTECLVCGPGI------------------------------- >4gskB SSERVLSYAPAFKSFLDTSFFQELSRLKLDSTSQPLTVNLDLHNIPKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWEDGIKDINKCVSFVIISFADLKKYRFYYWLGVPCFQRPSSTVLHVRPEPSLKGLFSKCQKWFDVNYSKWVCILDADDEIVNYDKSIIRKTKVLAIRDTSTMENVPSALTKNFLSVLQYDVPDLIDFKLLIIRQNEGSFALNATFASIPDMKVSGWERNVQGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILPDLNLDII-KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDAGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIE-------------NKTVINAA-LGFDSYLVMRHGNKQLGCYFCHRTL------DQMCTVT----------------------------------------------------------------------RPGVAMMASSLAVELMTSLLQTKETTVLGDIPHQIRGFLH-----NFSILKLETPAYEHCPACSPKVIEAFTDLGWEFVKKALEHPLYLEEISGLSVI [Model]
	41-347	4gskA	16%	>target ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDIRDYVRILVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRI--------------ED--KEIEFYNDFNIIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVILPGVTPCFECTIYLFPPQVKFPLCTLAETPRNAAHCIEYAHLIQWETVHRGKTFDPDEPEHMKWVYDEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSKTLVN-----YL--TYNGG-EGLYTEVTKFERDTECLVCGPGIL---------------------------- >4gskA SERVLSYAPAFKSFLDTSFFQELSRLKLDVTSQPLTVNLDLHNIPKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWEDGIKDINKCVSFVIISFADLKKYRFYYWLGVPCFQRPSSTVLHVRPEPSLKGLFSKCQKWFDVNYSKWVCILDADDEIVNYDKSIIRKTKVLAIRDTSTMENVPSALTKNFLSVLQYDVPDLIDFKLLIIRQNEGSFALNATFASPDMKVSGWERNVQGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILPDLNLDII-KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDAGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIE-------------NKTVINA-ALGFDSYL-VMRHGQLGCYFCHRTLD------QMCTVT------------------------------------------------------------------RPGV----AMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSPKVIEAFTDLGWEFVKKALEHPLYLEEISGLS [Model]

3vh2: CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE ATG7 (1-613)
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

41-346

3vh2A

16%

>target----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDIRDYVRILVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRI--------E------D--KEIEFYNDFNIIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVILPGVTPCFECTIYLFPPQVKF-----PLCTLAETPRNAAHCIEYAHLIQWETVHRGKTFDPDEPEHMKWVYDEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSKTLV-----NYL--TYNGGE-GLYTEVTKFERDTECLVCGPGI----------------------------->3vh2ASERVLSYAPAFKSFLDTSFFQELSRLKLDTCQPLTVNLDLHNIPKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWEDGIKDINKCVSFVIISFADLKKYRFYYWLGVPCFQRPSSTVLHVRPEPSLKGLFSKCQKWFDVNYSKWVCILDADDEIVNYDKCIIRKTKVLAIRDTSTMENVPSALTKNFLSVLQYDVPDLIDFKLLIIRQNEGSFALNATFASIDPDMKVSGWERNVQGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILPDLNLDII-KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNI-------------ENKTVINAA-LGFDSYL-VMRHGQLGCYFCHDVVAPTDSLTDRTLDQMCTV------------------------------------------------------------------TRPGV----AMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSPKVIEAFTDLGWEFVKKALEHPLYLEEISGLS

[Model]

3t7e: ATG8 TRANSFER FROM ATG7 TO ATG3: A DISTINCTIVE E1-E2 ARCHIMECHANISM IN THE AUTOPHAGY PATHWAY
Solved by: X-RAY, Resolution: 2.25A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

41-346

3t7eA

15%

[Model]

3vh3: CRYSTAL STRUCTURE OF ATG7CTD-ATG8 COMPLEX
Solved by: X-RAY, Resolution: 2.65A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

40-346

3vh3A

15%

[Model]

3vh4: CRYSTAL STRUCTURE OF ATG7CTD-ATG8-MGATP COMPLEX
Solved by: X-RAY, Resolution: 2.65A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

40-346

3vh4A

15%

[Model]

4gsl: CRYSTAL STRUCTURE OF AN ATG7-ATG3 CROSSLINKED COMPLEX
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	41-347	4gslB	15%	>target ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDIRDYVRILVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRI--------E------D--KEIEFYNDFNIIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVILPGVTPCFECTIYLFPPQVK-----FPLCTLAETPRNAAHCIEYAHLIQWETVHRGKTFDPDEPEHMKWVYDEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSKTLVN-----YL--TYNGG-EGLYTEVTKFERDTECLVCGPGIL-------------------------- >4gslB SERVLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLTVNLDLHNIPKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWEDGIKDINKCVSFVIISFADLKKYRFYYWLGVPCFQRPSSTVLHVRPEPSLKGLFSKCQKWFDVNYSKWVCILDADDEIVNYDKCIIRKTKVLAIRDTSTMENVPSALTKNFLSVLQYDVPDLIDFKLLIIRQNEGSFALNATFASIDPQSSNPDMKVSGWERNVQGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILPDLNLDII-KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIE-------------NKTVINAA-LGFDSYLVMRHGNQLGCYFCHDVVAPTDSLTDRTLDQMCTV------------------------------------------------------------------TRPGV----AMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSPKVIEAFTDLGWEFVKKALEHPLYLEEISG [Model]
	41-346	4gslA	15%	>target ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DDIRDYVRILVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRI------------ED----KEIEFYNDFNIIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVIL-PGVTPCFECTIYLFPPQVKF-----PLCTLAETPRNAAHCIEYAHLIQWETVHRGKTFDPDEPEHMKWVYDEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSKT-------------LVNYLTYNGGEGLYTEVTKFERDTECLVCGPGI-------------------------------- >4gslA SERVLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLTVNLDLHNIPKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWEDGIKDINKCVSFVIISFADLKKYRFYYWLGVPCFQRPSSTVLHVRPEPSLKGLFSKCQKWFDVNYSKWVCILDADDEIVNYDKCIIRKTKVLAIRDTSTMENVPSALTKNFLSVLQYDVPDLIDFKLLIIRQNEGSFALNATFASIDPQSSNPDMKVSGWERNVQGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILPDLNLDII-KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIE-------------NKTVINA-ALGFDSYLVMRHGNKQLGCYFCHDVVAPTDSLTDRTLDQMCTV----------------------------------------------------------------------TRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFLH-----NFSILKLETPAYEHCPACSPKVIEAFTDLGWEFVKKALEHPLYLEEISGLSVIK [Model]

3ic5: N-TERMINAL DOMAIN OF PUTATIVE SACCHAROPINE DEHYDROGENASE FROM RUEGERIA POMEROYI.
Solved by: X-RAY, Resolution: 2.08A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	46-178	3ic5A	13%	>target ---YVRILVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRIEDKE--IEFYNDFNIIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVD------------------ >3ic5A NAMRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLA-------------------ALAV----LN--RM--GVATKQVDAKDEAGLAKALGGFDAVISAAPFFLTP-IIAKAAK-------------AAGAHYFDLTEDVAATNAVRALVEDS [Model]
	46-178	3ic5B	13%	>target -YVRILVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRIEDKE--IEFYNDFNIIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVD-------------------- >3ic5B MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVL-------------------------NRMG--VATKQVDAKDEAGLAKALGGFDAVISAAPFFLTP-IIAKAAK-------------AAGAHYFDLTEDVAATNAVRALVEDSQT [Model]

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.