SWISS-MODEL Repository - Model Details

Model Overview
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1
518

Sequence
UniProt O67803
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Flagellin_N
Flagellin_C

Model 3D Structure
Model information:
Modelled residue range: 59 to 175
Based on template: [ 1io1 ]  
Sequence Identity [%]: 28%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    59        AGLEQG NRNIQFGISA LQIAEGGVSQ IYDKLKTMYQ KAVSAANDIN
1io1A     56    ni--kgltqa srnandgisi aqttegalne innnlqrvre lavqsanstn
                                                                      
TARGET               hhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhh     
1io1A               hhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhh     


TARGET    105   DPNARAALQR DIENLRDAIL KIAQDTEYNG IRLLNGSFNN VRIHYGARSA
1io1A     104   sqsdldsiqa eitqrlneid rvsgqtqfng vkvl-aqdnt ltiqvgandg
                                                                      
TARGET           hhhhhhhhh hhhhhhhhhh hhhhh            ssss sssss     
1io1A            hhhhhhhhh hhhhhhhhhh hhhhh              ss sssss     


TARGET    155   QTLSVSISSV LPQQLGGYVA E -------- ---------- ----------
1io1A     153   etididlkqi nsqtlgldtl nvqqkykvsd taatvtgyad ttialdnstf
                                                                      
TARGET          sssssssss   hhhh                                      
1io1A           sssssss     hhhh            ssss sss   ssss s sss     


TARGET          ---------- ---------- ---------- ---------- ----------
1io1A     203   kasatglggt dqkidgdlkf ddttgkyyak vtvtggtgkd gyyevsvdkt
                                                                      
TARGET                                                                
1io1A                      sssss  sss s    sssss ssss       ssssssss  


TARGET          ---------- ---------- ---------- ---------- ----------
1io1A     253   ngevtlagga tspltgglpa tatedvknvq vanadlteak aaltaagvtg
                                                                      
TARGET                                                                
1io1A             sssss                  sssssss sss   hhhh hhhhhh    


TARGET          ---------- ---------- ---------- ---------- ----------
1io1A     303   tasvvkmsyt dnngktidgg lavkvgddyy satqnkdgsi sinttkytad
                                                                      
TARGET                                                                
1io1A             ssssssss s   ssssss sssss  sss sssss   ss sss   sss 


TARGET          ---------- ---------- ---------- ---------- ----------
1io1A     353   dgtsktalnk lggadgktev vsiggktyaa skaeghnfka qpdlaeaaat
                                                                      
TARGET                                                                
1io1A             sss   ss ss     sss sss  sssss hhh                  


TARGET          ---------- ---------- ---------- ---------- --------  
1io1A     403   ttenplqkid aalaqvdtlr sdlaavqnrf nsaitnlgnt vnnltsar  
                                                                      
TARGET                                                                
1io1A                hhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: e9502701ced7829d7bf8fe504c4ee5b2 on BC2-cluster at Sat Aug 30 04:02:10 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>e9502701ced7829d7bf8fe504c4ee5b2
***************************************************************************************
>1oryB Evalue:6.53278e-14 SeqID:100.000 Method:BLAST Type:PDB
--------------------------------------------------------------------------------*******
>1io1A Evalue:7E-34 SeqID:28.205 Method:HHSEARCH Type:MODEL
----------*******************----------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1oryB          479            517            BLAST          PDB            
1io1A          59             175            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: e9502701ced7829d7bf8fe504c4ee5b2 on gopt-39.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 04:08:49 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.