SWISS-MODEL Repository - Model Details

Model Overview
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1
289

Sequence
UniProt O69583
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Cytochrom_C
Cytochrome_CBB3

Model 3D Structure
Model information:
Modelled residue range: 72 to 247
Based on template: [ 1etp ]  
Sequence Identity [%]: 20%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    72          RTGK QLFDTSCVSC HGANLQGVPD HGPSLIGVGE AAVYFQVSTG
1etpA     1     agda--eagq gkvav-cgac hgvdgnspap nfpklagqge ryllkqlqdi
                                                                      
TARGET                  hh         hh h                   h hhhhhhhhhh
1etpA              h  hhhh     h hhhh h                   h hhhhhhhhhh


TARGET    116   RMP------- -AMRGEAQVA RKDPIFNESQ IDAIGAYIQA NGGGPTVARN
1etpA     48    kagstpgape gvgrkvlemt gmldplsdqd lediaayfss qkgsvgyad-
                                                                      
TARGET                      hhhhh       hh   hhh hhhhhhhhh        hhhh
1etpA           hhh                     hh   hhh hhhhhhhhh            


TARGET    158   PDGSVAMQSL RGTDLGRGGD L--FRLNCAS CHNFTGKGGA LSSGKYAPDL
1etpA     97    -----palak qgeklfrggk ldqgmpactg chapngvgnd l---agfpkl
                                                                      
TARGET          hh      hh hhhhhhh            hh hh      ss s  sss    
1etpA                hhhhh hhhhhhh            hh hh                   


TARGET    206   GPANE---QQ ILTA----ML TGP---QNMP KFADRQLSFE AKKDIIGYVR
1etpA     139   ggqhaaytak qltdfregnr tndgdtmimr gvaak-lsnk diealssyiq
                                                                      
TARGET                                         h hhh     hh hhhhhhhhhh
1etpA               hhhhhh hhhhhhh           hhh hhhh    hh hhhhhhhhhh


TARGET    246   TV                                                    
1etpA     188   glh                                                   
                                                                      
TARGET          h                                                     
1etpA           h

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 4a44f673387124865b45f5495ac9d5d0 on BC2-cluster at Sun Aug 31 15:47:01 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>4a44f673387124865b45f5495ac9d5d0
*************************************************************************
>1etpA Evalue:8E-18 SeqID:20.408 Method:HHSEARCH Type:MODEL
------------------*********************-*********-************-----------
>1zzhA Evalue:2.8E-16 SeqID:17.668 Method:HHSEARCH Type:MODEL
-------------***-*************************-********************----------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1etpA          72             247            HHSEARCH       BUILT          
1zzhA          52             253            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 4a44f673387124865b45f5495ac9d5d0 on gopt-60.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 15:50:08 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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