SWISS-MODEL Repository - Model Details

Model Overview
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1
351

Sequence
UniProt O73559
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
TNFR_c6
TNFR_c6
DUF1406

Model 3D Structure
Model information:
Modelled residue range: 38 to 155
Based on template: [ 2uwi ]  
Sequence Identity [%]: 44%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    38                NRHNLCCLS CPPGTYASRL CDSKTNTNTQ CTPCGSGTFT
2uwiA     22    ceqgvsyyn- -sqelkcckl ckpgtysdhr cd--kysdti cghcpsdtft
                                                                      
TARGET                                   sssss            s ssss  sss 
2uwiA               sssss       sssss    sssss            s ssss  sss 


TARGET    77    SRNNHLPACL SCNGRCDSNQ VETRSCNTTH NRICECAPGY YCLLKG-SSG
2uwiA     68    siynrspwch scrgpcgtnr vevtpctptt nrichcdsns ycllkasdgn
                                                                      
TARGET                   s ss         sss          sss   ss ssssss   s
2uwiA                    s ss         sss          sss   ss ssssss   s


TARGET    126   CKACVSQTKC GIGYGVSGHT STGDVVCSPC                      
2uwiA     118   cvtcapktkc grgygkkged emgntickkc r                    
                                                                      
TARGET          sssssss      ssssssss    sssssss                      
2uwiA           sssssss      ssssssss    sssssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 2655d4de3af35cd98a882fb39c86cf5b on BC2-cluster at Fri Aug 29 21:10:59 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>2655d4de3af35cd98a882fb39c86cf5b
****************************************************************************************
>2uwiA Evalue:4.4E-20 SeqID:44.538 Method:HHSEARCH Type:MODEL
---------******************************-------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2uwiA          38             155            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 2655d4de3af35cd98a882fb39c86cf5b on gopt-57.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 21:13:36 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.