SWISS-MODEL Repository

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SWISS-MODEL Repository - Model Details

Model Overview

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509

Sequence

UniProt

O76924

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING

O76924: 7227.FBpp0071688

Domain

Link to: [ InterPro ]

	IBR
	IBR
	zf-C3HC4_2

Model 3D Structure

	Model information:
	Modelled residue range:	303 to 359
	Based on template:	[ 1wd2 ]
	Sequence Identity [%]:	61%
	Model date:	2013-05-07
	Revision date:	2013-04-01

Quaternary structure information:	[details]
Template (1wd2): MONOMER Model: MONOMER

Ligand information:	[details]
Ligands in the template: ZN: 1. Ligands in the model: none.

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment


TARGET    1       YISAHTKD CPKCHICIEK NGGCNHMQCF NC--KHDFCW MCLGDWKTHG
1wd2_1#3  11      wiaantke cpkchvtiek dggcnhmvcr nqnckaefcw vclgpwephg
                                                                      
TARGET                                                            hhh 
1wd2_1#3                                            hh            hhh 


TARGET    47    SEYYECSRYK D                                          
1wd2_1#3  59    sawyncnryn ef                                         
                                                                      
TARGET                                                                
1wd2_1#3

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Ligands in the template: ZN: 1. 
Ligands in the template that will be assessed: ZN1. 
Model's ligands section 
ZN1 
Not all the residues interacting with the ligand are completely conserved between model and template. 
No RMSD calculation will be performed. 
Given the properties calculated previously, the ligand z.ZN1 will not be included in the final model. 
ZN1: conservation:False, RMSD:False, included: False 
 
No ligands were included in the model.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template 
 1wd2 is annotated as MONOMER 
 The template structure (1wd2) was solved by NMR and does not contain any quaternary structure annotation 
 The template is annotated by the number of chains found in the PDB file 
      
 
Quaternary Structure Modelling of the Target Protein 
 The quaternary structure can be assumed to be identical 
 Model was succesfully built as MONOMER.

Template Selection

 - Start SMR-Pipeline for:ba20c102fd1c914144cadb40fca70a83 on BC2-cluster at Tue May  7 10:22:00
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1
 - But still uncovered regions of the target sequence detected, go for: HHSEARCH

 - No A3m found

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - Skip Template HHsearch issue
 - No template with A found
 - No template with C found
 - No template with B found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with B found
 - No template with B found
 - No template with D found
 - No template with B found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:6): model based on new templates
 - Send 6 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                                 *********
 - building model based on 1wd2A (303-359) was successful 
 -                        ********
 - building model based on 2ysjA (149-199) was successful 
 -                        **************
 - building model based on 1wimA (149-236) was successful 
 -                                          ***************
 - building model based on 4ap4A (261-356) was successful 
 -                                   ***********
 - building model based on 2jmoA (215-285) was successful 
 -                        ******************
 - building model based on 3hcsB (146-258) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:ba20c102fd1c914144cadb40fca70a83 on BC2-cluster at Tue May  7 10:35:06
2013

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

1wd2: SOLUTION STRUCTURE OF THE C-TERMINAL RING FROM A RING-IBR-RING (TRIAD) MOTIF
Solved by: NMR, Identified by BLAST
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

303-359

1wd2A

61%

2ysj: SOLUTION STRUCTURE OF THE RING DOMAIN (1-56) FROM TRIPARTITE MOTIF-CONTAINING PROTEIN 31
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

149-199

2ysjA

29%

2ckl: RING1B-BMI1 E3 CATALYTIC DOMAIN STRUCTURE
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

149-206

2cklA

29%

3rpg: BMI1/RING1B-UBCH5C COMPLEX STRUCTURE
Solved by: X-RAY, Resolution: 2.65A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

148-206

3rpgB

28%

2h0d: STRUCTURE OF A BMI-1-RING1B POLYCOMB GROUP UBIQUITIN LIGASCOMPLEX
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

149-207

2h0dA

28%

2ecw: SOLUTION STRUCTURE OF THE ZINC FINGER, C3HC4 TYPE (RING FINGER) DOMAIN TRIPARTITE MOTIF PROTEIN 30
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

150-211

2ecwA

26%

2ysl: SOLUTION STRUCTURE OF THE RING DOMAIN (1-66) FROM TRIPARTITE MOTIF-CONTAINING PROTEIN 31
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

149-212

2yslA

25%

2ecj: SOLUTION STRUCTURE OF THE RING DOMAIN OF THE HUMAN TRIPARTITE MOTIF-CONTAINING PROTEIN 39
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

149-199

2ecjA

25%

1z6u: NP95-LIKE RING FINGER PROTEIN ISOFORM B [HOMO SAPIENS]
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	150-209	1z6uA	25%	>target ------------------------------------------SQMCPVCASSQLGDKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPED------------------------ >1z6uA EAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEGPNFLKKLEQSFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKAQ-------VFSCPA--CRHDLGQNYIMIPNEILQTLLDLFFPGYSKGR [Model]
	150-209	1z6uB	25%	>target ------------------------------------------SQMCPVCASSQLGDKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPED------------------------ >1z6uB EAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEGPNFLKKLEQSFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKAQ-------VFSCPA--CRHDLGQNYIMIPNEILQTLLDLFFPGYSKGR [Model]

1e4u: N-TERMINAL RING FINGER DOMAIN OF HUMAN NOT-4
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

147-212

1e4uA

24%

2ecv: SOLUTION STRUCTURE OF THE ZINC FINGER, C3HC4 TYPE (RING FINGER) DOMAIN OF TRIPARTITE MOTIF-CONTAINING PROTEIN 5
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

150-211

2ecvA

24%

2d8t: SOLUTION STRUCTURE OF THE RING DOMAIN OF THE HUMAN RING FINGER PROTEIN 146
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

143-212

2d8tA

23%

2l0b: SOLUTION NMR STRUCTURE OF ZINC FINGER DOMAIN OF E3 UBIQUITLIGASE PRAJA-1 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GECONSORTIUM (NESG) TARGET HR4710B
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

148-207

2l0bA

23%

3l11: CRYSTAL STRUCTURE OF THE RING DOMAIN OF RNF168
Solved by: X-RAY, Resolution: 2.12A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

143-208

3l11A

23%

2egp: SOLUTION STRUCTURE OF THE RING-FINGER DOMAIN FROM HUMAN TRIPARTITE MOTIF PROTEIN 34
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

148-211

2egpA

22%

3fl2: CRYSTAL STRUCTURE OF THE RING DOMAIN OF THE E3 UBIQUITIN- PROTEIN LIGASE UHRF1
Solved by: X-RAY, Resolution: 1.75A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

150-208

3fl2A

22%

1wim: SOLUTION STRUCTURE OF THE RING FINGER DOMAIN OF THE HUMAN UBCM4-INTERACTING PROTEIN 4
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

149-236

1wimA

22%

4ayc: RNF8 RING DOMAIN STRUCTURE
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	150-208	4aycB	20%	>target -----------------------------------------SQMCPVCASSQLGDKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPE-------------------------------------- >4aycB KDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR----K----IECPI--CRKDIKSKTYSLVLDNINKMVNNLSSEVKERRIVLIRERKAKRLF [Model]
	150-207	4aycA	21%	>target ----------------------------------------------------SQMCPVCASSQLGDKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVP-------------------------------------- >4aycA LGSMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR--------KIECPI--CRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRIVLIRERKAKR [Model]

4ap4: RNF4 - UBCH5A - UBIQUITIN HETEROTRIMERIC COMPLEX
Solved by: X-RAY, Resolution: 2.21A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	149-207	4ap4A	19%	>target -RSQMCPVCASSQLG-----DKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVP-------------------------------------------------------------------------- >4ap4A SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI [Model]
	261-356	4ap4A	21%	>target ----------------------AICKACHTGFCFRCGMDY-HAPTDCQVIKKWLTKCADDSETANYISAHTKDCPKCHICIEK-NGGCNHMQCFNCKHDFCWMCLGDWKTHGSEYYECSR------------ >4ap4A SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK---RYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI [Model]

2eci: SOLUTION STRUCTURE OF THE RING DOMAIN OF THE HUMAN TNF RECEPTOR-ASSOCIATED FACTOR 6 PROTEIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

147-211

2eciA

20%

2ecy: SOLUTION STRUCTURE OF THE ZINC FINGER, C3HC4 TYPE (RING FINGER)" DOMAIN OF TNF RECEPTOR-ASSOCIATED FACTOR 3
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

148-211

2ecyA

20%

4epo: CRYSTAL STRUCTURE OF RNF8 BOUND TO THE UBC13/MMS2 HETERODI
Solved by: X-RAY, Resolution: 4.80A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

150-215	4epoH	20%	>target ----------------------------------------------------------SQMCPVCASSQLGDKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVLTLV------------------------ >4epoH PGFQEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR----K----IECPICRKDILVLDNCINKMVNNLSSEVKERRIVLIRERKAKRLF [Model]
150-215	4epoG	20%	>target -------------------------------------------------------SQMCPVCASSQLGDKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVLTLV------------------------ >4epoG QEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR----K----IECPICRKDILVLDNCINKMVNNLSSEVKERRIVLIRERKAKRLF [Model]
150-215	4epoL	20%	>target ----------------------------------------------------------SQMCPVCASSQLGDKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVLTLV------------------------ >4epoL PGFQEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR----K----IECPICRKDILVLDNCINKMVNNLSSEVKERRIVLIRERKAKRLF [Model]
150-215	4epoK	20%	>target -------------------------------------------------------SQMCPVCASSQLGDKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVLTLV------------------------ >4epoK QEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR----K----IECPICRKDILVLDNCINKMVNNLSSEVKERRIVLIRERKAKRLF [Model]
149-209	4epoC	20%	>target -------RSQMCPVCASSQLGDKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPED-------------------------------- >4epoC HMNDVLENELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR--------KIECPI--CRKDILVLDNCINKMVNNLSSEVKERRIVLIRERKAKRLF [Model]

2ect: SOLUTION STRUCTURE OF THE ZINC FINGER, C3HC4 TYPE (RING FINGER) DOMAIN OF RING FINGER PROTEIN 126
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

148-207

2ectA

20%

2kiz: SOLUTION STRUCTURE OF ARKADIA RING-H2 FINGER DOMAIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

148-207

2kizA

20%

2jmd: SOLUTION STRUCTURE OF THE RING DOMAIN OF HUMAN TRAF6
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

147-211

2jmdA

20%

1g25: SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE HUMAN TFIIH MAT1 SUBUNIT
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

150-213

1g25A

19%

1jm7: SOLUTION STRUCTURE OF THE BRCA1/BARD1 RING-DOMAIN HETERODIMER
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	150-211	1jm7A	21%	>target --------------------SQMCPVCASSQLGDKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLV------------------------------ >1jm7A MDLSALRVEEVQNVINAMQKILECPICLELI--KEPVSTKCDHIFCKFCMLKLLNQK--KG---PSQCPL--CKNDITKRSLQESTRFSQLVEELLKIICAFQLDTGLEYAN [Model]
	150-212	1jm7B	19%	>target ---------------------SQMCPVCASSQLGDKFYSL-ACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVL-------------------------- >1jm7B MEPDGRGAWAHSRAALDRLEKLLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIGT----------GCPV--CYTPAWIQDLKINRQLDSMIQLCSKLRNLLHDNELSD [Model]

2ep4: SOLUTION STRUCTURE OF RING FINGER FROM HUMAN RING FINGER PROTEIN 24
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

147-207

2ep4A

19%

2jmo: IBR DOMAIN OF HUMAN PARKIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	309-346	2jmoA	18%	>target -------------------------KDC--PKCHICIEKNGGCNHMQCFN-----CKHDFCWMCLGDWKT---------- >2jmoA GHMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEAS [Model]
	215-285	2jmoA	21%	>target --VTRPVMRDKYQQFAFKDYVKSHPELRFCPGPNCQIIVQSSEISAKRAICKA-----CHTGFCFRCGMDYHAPTDCQ------ >2jmoA GHMG-EEQYNRYQQYGAEECVLQMGGV-LCPRPGCGAGLLPE-PDQRKVTCEGGNGLGCGFAFCRECKEAYHEG-ECSAVFEAS [Model]

2ea6: SOLUTION STRUCTURE OF THE RING DOMAIN OF THE HUMAN RING FINGER PROTEIN 4
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

148-207

2ea6A

18%

2ct2: SOLUTION STRUCTURE OF THE RING DOMAIN OF THE TRIPARTITE MOTIF PROTEIN 32
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

148-216

2ct2A

18%

2y43: RAD18 UBIQUITIN LIGASE RING DOMAIN STRUCTURE
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	149-212	2y43A	17%	>target -------------RSQMCPVCASSQLGDKFYSL-ACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVL---------------------- >2y43A RWPPGLAVMKTIDDLLRCGICFEYF--NIAMIIPQCSHNYCSLCIRKFLSY----K----TQCPT--CCVTVTEPDLKNNRILDELVKSLNFARNHLLQF [Model]
	148-211	2y43B	17%	>target -------------YRSQMCPVCASSQLGDKFYSL-ACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLV---------------------- >2y43B SRWPPGLAVMKTIDDLLRCGICFEYF--NIAMIIPQCSHNYCSLCIRKFLSYK--------TQCPT--CCVTVTEPDLKNNRILDELVKSLNFARNHLLQ [Model]

1x4j: SOLUTION STRUCTURE OF RING FINGER IN RING FINGER PROTEIN 3
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

149-207

1x4jA

17%

3hcs: CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF TRAF6
Solved by: X-RAY, Resolution: 2.20A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	146-258	3hcsA	17%	>target ---------PQYRSQMCPVCASSQLGDKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVLTLVTRPVMRDKYQQFAFKDYVKSHPELRFCPGPNCQIIVQSSEISA------------------------------------------------------------ >3hcsA QGYDVEFDPPLESKYECPICLMA--LREAVQTPCGHRFCKACIIKSIRD----A---GHKCPV--DNEILLENQLF---PDNFA---------KREILS--LMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPL [Model]
	146-258	3hcsB	17%	>target ---------PQYRSQMCPVCASSQLGDKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVLTLVTRPVMRDKYQQFAFKDYVKSHPELRFCPGPNCQIIVQSSEISA------------------------------------------------------------ >3hcsB QGYDVEFDPPLESKYECPICLMA--LREAVQTPCGHRFCKACIIKSIRD----A---GHKCPV--DNEILLENQLF---PDNFA---------KREILS--LMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPL [Model]

2xeu: RING DOMAIN
Solved by: X-RAY, Resolution: 1.50A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

150-213

2xeuA

17%

3ng2: CRYSTAL STRUCTURE OF THE RNF4 RING DOMAIN DIMER
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	149-213	3ng2B	17%	>target ----RSQMCPVCASSQLGD-----KFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVLT--- >3ng2B LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPIYI [Model]
	148-212	3ng2A	17%	>target --YRSQMCPVCASSQLGD-----KFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVL---- >3ng2A RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPIYI [Model]

2ct7: SOLUTION STRUCTURE OF THE IBR DOMAIN OF THE RING FINGER PROTEIN 31 PROTEIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	218-295	2ct7A	17%	>target ---PVMRDKYQQFAFKDYVKSHPELRFCPGPNCQIIVQSSEISAKRAICKACHTGFCFRCGMDY---HAPTDCQVIKKWLTKCA----- >2ct7A GSSGSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYE-REQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRMNSGPSSG [Model]
	305-359	2ct7A	16%	>target ---------------------SAHTKDCPKCHICIEKNGGCNHMQCFNCKHDFCWMCLGDWKTHGSEYYECSRYKD----------- >2ct7A GSSGSSGALFHKKLTEGVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRG-RSCEDFQNWKRMNSGPSSG [Model]

3knv: CRYSTAL STRUCTURE OF THE RING AND FIRST ZINC FINGER DOMAINOF TRAF2
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

146-256

3knvA

16%

2yur: SOLUTION STRUCTURE OF THE RING FINGER OF HUMAN RETINOBLASTOMA-BINDING PROTEIN 6
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

146-206

2yurA

16%

3ztg: SOLUTION STRUCTURE OF THE RING FINGER-LIKE DOMAIN OF RETINOBLASTOMA BINDING PROTEIN-6 (RBBP6)
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	147-206	3ztgB	15%	>target ---------QYRSQMCPVCASSQLGDKFYSL-ACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRV-------------------------------- >3ztgB GPLGSEDDPIPDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQNDVSPDALIANKFLRQAVNNFKNETGYTKRLRKQ [Model]
	147-206	3ztgA	15%	>target ---------QYRSQMCPVCASSQLGDKFYSL-ACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRV-------------------------------- >3ztgA GPLGSEDDPIPDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES---D---EHTCPT--CHQNDVSPDALIANKFLRQAVNNFKNETGYTKRLRKQ [Model]

2yu4: SOLUTION STRUCTURE OF THE SP-RING DOMAIN IN NON-SMC ELEMEN2 HOMOLOG (MMS21, S. CEREVISIAE)
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

148-227

2yu4A

15%

3hcu: CRYSTAL STRUCTURE OF TRAF6 IN COMPLEX WITH UBC13 IN THE C2SPACE GROUP
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	146-257	3hcuA	16%	>target ---------PQYRSQMCPVCASSQLGDKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVLTLVTRPVMRDKYQQFAFKDYVKSHPELRFCPGPNCQIIVQSSEIS---------- >3hcuA QGYDVEFDPPLESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIR----DA---GHKCPV--DNEILLENQL---FPDN---------FAKREIL--SLMVKCPNEGCLHKMELRHLEDHQAHCEFAL [Model]
	147-257	3hcuC	15%	>target ----------QYRSQMCPVCASSQLGDKFYSLACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVLTLVTRPVMRDKYQQFAFKDYVKSHPELRFCPGPNCQIIVQSSEIS-------- >3hcuC QGYDVEFDPPLESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRD----A---GHKCPV--DNEILLENQL---FPDNFA---------KREIL--SLMVKCPNEGCLHKMELRHLEDHQAHCEF [Model]

3hct: CRYSTAL STRUCTURE OF TRAF6 IN COMPLEX WITH UBC13 IN THE P1SPACE GROUP
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

147-257

3hctA

15%

1rmd: RAG1 DIMERIZATION DOMAIN
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

147-255

1rmdA

14%

3lrq: CRYSTAL STRUCTURE OF THE U-BOX DOMAIN OF HUMAN UBIQUITIN- PROTEIN LIGASE (E3), NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR4604D.
Solved by: X-RAY, Resolution: 2.29A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

149-212	3lrqD	11%	>target ----------RSQMCPVCASSQLGDKFYSL-ACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVL-------------------- >3lrqD MDEQSVESIAEVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTE----Q---RAQCPH--CRAPLQLRELVNCRWAEEVTQQLDTLQLCSL [Model]
149-213	3lrqA	11%	>target -----------RSQMCPVCASSQLGDKFYSL-ACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVLT---------------- >3lrqA HMDEQSVESIAEVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTE----Q---RAQCPH--CRAPLQLRELVNCRWAEEVTQQLDTLQL [Model]
149-213	3lrqC	11%	>target ----------RSQMCPVCASSQLGDKFYSL-ACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVLT----------------- >3lrqC MDEQSVESIAEVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTE----Q---RAQCPH--CRAPLQLRELVNCRWAEEVTQQLDTLQLC [Model]
149-211	3lrqB	11%	>target -----------RSQMCPVCASSQLGDKFYSL-ACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLV---------------- >3lrqB HMDEQSVESIAEVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTE----Q---RAQCPH--CRAPLQLRELVNCRWAEEVTQQLDTL [Model]

1t1h: NMR SOLUTION STRUCTURE OF THE U BOX DOMAIN FROM ATPUB14, AARMADILLO REPEAT CONTAINING PROTEIN FROM ARABIDOPSIS THALIANA
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

149-228

1t1hA

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.