SWISS-MODEL Repository - Model Details

Model Overview
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1
307

Sequence
UniProt O76932
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
O76932: 7227.FBpp0077017

Domain
Link to: [ InterPro ]
Metallophos

Model 3D Structure
Model information:
Modelled residue range: 6 to 290
Based on template: [ 3c5w ]  
Sequence Identity [%]: 65%
Model date: 2013-02-22
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (3c5w): HETERO TRIMER
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1          DLDRQ IEQLKRCEII KENEVKALCA KAREILVEEG NVQRVDSPVT
3c5wC     6     ftk--eldqw ieqlneckql sesqvkslce kakeiltkes nvqevrcpvt
                                                                      
TARGET                hhhh hhhh        hhhhhhhhh hhhhhhh    sssss   ss
3c5wC            hh  hhhhh hhhh        hhhhhhhhh hhhhhhh    sssss   ss


TARGET    46    VCGDIHGQFY DLKELFKVGG DVPEKNYLFM GDFVDRGYYS VETFLLLLAL
3c5wC     54    vcgdvhgqfh dlmelfrigg kspdtnylfm gdyvdrgyys vetvtllval
                                                                      
TARGET          ss      hh hhhhhhhhh       sssss          h hhhhhhhhhh
3c5wC           ss      hh hhhhhhhhh       sssss          h hhhhhhhhhh


TARGET    96    KVRYPDRITL IRGNHESRQI TQVYGFYDEC LRKYGSTAVW RYCTEIFDYL
3c5wC     104   kvryreriti lrgnhesrqi tqvygfydec lrkygnanvw kyftdlfdyl
                                                                      
TARGET          hhh   ssss s      hhh hhh   hhhh hhh    hhh hhhhhhhh  
3c5wC           hhh   ssss s      hhh hhh   hhhh hhh    hhh hhhhhhhh  


TARGET    146   SLSAIIDGKI FCVHGGLSPS IQYLDQIRSI DRKQEVPHDG PMCDLLWSDP
3c5wC     154   pltalvdgqi fclhgglsps idtldhiral drlqevpheg pmcdllwsdp
                                                                      
TARGET            sssss  s sss            hhhh              hhhhhh  ss
3c5wC             sssss  s sss            hhhh              hhhhhh  ss


TARGET    196   EDQTGWGVSP RGAGYLFGSD VVSQFNRTND IDMICRAHQL VMEGFKWHFN
3c5wC     204   ddrggwgisp rgagytfgqd isetfnhang ltlvsrahql vmegynwchd
                                                                      
TARGET          s   sss        sssshh hhhhhhhhh    ssss        ssssss 
3c5wC           s   sss        sssshh hhhhhhhhh    ssss        ssssss 


TARGET    246   ETVLTVWSAP NYCYRCGNVA AILELNEYLH RDFVIFEAAP  -----    
3c5wC     254   rnvvtifsap nycyrcgnqa aimelddtlk ysflqfdpap tpdyfl    
                                                                      
TARGET           ssssss             s ssssss   s ssssss               
3c5wC            ssssss             s ssssss   s ssssss

Quality 


Template's ligands section 
Template without ligands. 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 3c5w is annotated as HETERO TRIMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 3c5w.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 3c5w_1

Template Selection 
 - Start SMR-Pipeline for:75ef697018c5820f09e7a7bacb924235 on BC2-cluster at Fri Feb 22 12:17:21
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1 go for
modeling ...

FATAL - No A3m found

 - No template with A found
 - No template with T found
 - No template with D found
 - No template with E found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with D found
 - No template with D found
 - No template with E found
 - No template with A found
 - No template with B found
 - No template with A found
 - No template with B found
 - No template with D found
 - No template with E found
 - No template with A found
 - No template with B found
 - No template with D found
 - No template with E found
 - No template with A found
 - No template with A found
 - No template with B found
 - No template with D found
 - No template with E found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with P found
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -   **************************************************************************
 - building model based on 3c5wC (6-290) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:75ef697018c5820f09e7a7bacb924235 on BC2-cluster at Fri Feb 22 12:18:20
2013


Template Description
Match Chain SeqId

2ie3: STRUCTURE OF THE PROTEIN PHOSPHATASE 2A CORE ENZYME BOUND TO TUMOR-INDUCING TOXINS
Solved by: X-RAY, Resolution: 2.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-290 2ie3C 66%
[Model]

3c5w: COMPLEX BETWEEN PP2A-SPECIFIC METHYLESTERASE PME-1 AND PP2CORE ENZYME
Solved by: X-RAY, Resolution: 2.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-290 3c5wC 66%
[Model]

3dw8: STRUCTURE OF A PROTEIN PHOSPHATASE 2A HOLOENZYME WITH B55 SUBUNIT
Solved by: X-RAY, Resolution: 2.85A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-290 3dw8C 66%
[Model]
6-290 3dw8F 66%
[Model]

3k7w: PROTEIN PHOSPHATASE 2A CORE COMPLEX BOUND TO DINOPHYSISTOXIN-2
Solved by: X-RAY, Resolution: 2.96A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-290 3k7wC 66%
[Model]

2nym: CRYSTAL STRUCTURE OF PROTEIN PHOSPHATASE 2A (PP2A) WITH C-TERMINUS TRUNCATED CATALYTIC SUBUNIT
Solved by: X-RAY, Resolution: 3.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-291 2nymC 66%
[Model]
6-291 2nymF 66%
[Model]

3k7v: PROTEIN PHOSPHATASE 2A CORE COMPLEX BOUND TO DINOPHYSISTOXIN-1
Solved by: X-RAY, Resolution: 2.85A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-290 3k7vC 66%
[Model]

2nyl: CRYSTAL STRUCTURE OF PROTEIN PHOSPHATASE 2A (PP2A) HOLOENZYME WITH THE CATALYTIC SUBUNIT CARBOXYL TERMINUS TRUNCATED
Solved by: X-RAY, Resolution: 3.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-291 2nylC 66%
[Model]
6-291 2nylF 66%
[Model]

2ie4: STRUCTURE OF THE PROTEIN PHOSPHATASE 2A CORE ENZYME BOUND TO OKADAIC ACID
Solved by: X-RAY, Resolution: 2.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-290 2ie4C 66%
[Model]

2iae: CRYSTAL STRUCTURE OF A PROTEIN PHOSPHATASE 2A (PP2A) HOLOENZYME.
Solved by: X-RAY, Resolution: 3.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-306 2iaeC 64%
[Model]
6-291 2iaeF 65%
[Model]

3fga: STRUCTURAL BASIS OF PP2A AND SGO INTERACTION
Solved by: X-RAY, Resolution: 2.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-307 3fgaC 64%
[Model]

3p71: CRYSTAL STRUCTURE OF THE COMPLEX OF LCMT-1 AND PP2A
Solved by: X-RAY, Resolution: 2.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-307 3p71C 64%
[Model]

2npp: STRUCTURE OF THE PROTEIN PHOSPHATASE 2A HOLOENZYME
Solved by: X-RAY, Resolution: 3.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-307 2nppF 64%
[Model]
6-307 2nppC 64%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.