SWISS-MODEL Repository - Model Details

Model Overview
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1
599

Sequence
UniProt O78411
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
DnaB
DnaB_C
DnaB_C

Model 3D Structure
Model information:
Modelled residue range: 6 to 595
Based on template: [ 2r6a ]  
Sequence Identity [%]: 24%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    6          FYNLK AEKHLIIQIL VEKDFFLQIY TKIDTQVFYF QSHQILYRSI
2r6aA     8     rip--pqsie aeqavlgavf ldpaalvpas eilipedfyr aahqkifham
                                                                      
TARGET                  hh hhhhhhhhhh    hhhhhhh hh         hhhhhhhhhh
2r6aA                   hh hhhhhhhhhh    hhhhhhh hh         hhhhhhhhhh


TARGET    51    NILHTKKVLI NLPNLLSLLH --SELVSETV INYLITLFND RDNFRILNIN
2r6aA     56    lrvadrgepv dlvtvtaela aseqleeigg vsylselada v--ptaanve
                                                                      
TARGET          hhhhh       hhhhhhh       hhhh    hhhhhh            hh
2r6aA           hhhhh       hhhhhhhhh    hhhhh    hhhhhhhh           h


TARGET    99    DSLKVLLDNF IRRELQNSCA KIVSLTFNFN LSVETLLQKS NLLISNINTY
2r6aA     104   yyariveeks vlrrlirtat siaqdgytre deidvlldea drkimevsqr
                                                                      
TARGET          hhhhhhhhhh hhhhhhhhhh hhhhhhh       hhhhhhh hhhhhhh   
2r6aA           hhhhhhhhhh hhhhhhhhhh hhhhhhh       hhhhhhh hhhhhhh   


TARGET    149   NKKVSLKSIS QLLLETILEI DKKTNRS--- THVLTGFFDL DHILVGLQKS
2r6aA     154   khsgafknik dilvqtydni emlhnrdgei tgiptgftel drmtsgfqrs
                                                                      
TARGET                  hh hhhhhhhhhh hhhh              hhh hhhh      
2r6aA                   hh hhhhhhhhhh hhhh              hhh hhhh      


TARGET    196   DLIIIAGRPS MGKTAFMLSL VRNVADIQSF PIVIFSLEMS SKQLIYRLIS
2r6aA     204   dliivaarps vgktafalni aqnvatktne nvaifslems aqqlvmrmlc
                                                                      
TARGET          sssssss      hhhhhhhh hhhhhhh    ssssss     hhhhhhhhhh
2r6aA           sssssss      hhhhhhhh hhhhhhh    ssssss     hhhhhhhhhh


TARGET    246   NETNIATSRL REGNISISEW EILNRAMTIL SNLNIYLDDE NNLDVLDIQS
2r6aA     254   aegninaqnl rtgkltpedw gkltmamgsl snagiyiddt psirvsdira
                                                                      
TARGET          hhh   hhhh h     hhhh hhhhhhhhhh h  sssss       hhhhhh
2r6aA           hhh   hhhh h     hhhh hhhhhhhhhh h  sssss       hhhhhh


TARGET    296   KLASLQQIYG DIGLIVIDYL QLLQYKEKSS QRHIELSYIT RYLKLIAKDF
2r6aA     304   kcrrlkqesg -lgmividyl qliqgs---g rrqqevseis rslkalarel
                                                                      
TARGET          hhhhhhh       sssss                  hhhhhh hhhhhhhhhh
2r6aA           hhhhh         sssss                hhhhhhhh hhhhhhhhhh


TARGET    346   NLPLVVLSQL SRNVEFRLNK RPILSDLKES GCLSYATNQP YFLKSDNVNF
2r6aA     354   evpvialsql srsveqr--- rpmmsdires g--------- ----------
                                                                      
TARGET            ssssss        sss       h               s ss    hhhh
2r6aA             ssssss      hh          h                           


TARGET    396   SKLTSLKVSN HYILSATLEL LIPFQYNRIY PIVSLIKREL QTGYKVVYEL
2r6aA           ---------- ---------- ---------- ---------- ----------
                                                                      
TARGET          hhhhhhh    ssshhhhh               sss   hhh hh  sss   
2r6aA                                                                 


TARGET    446   DFYISVIVST VEHYVLTLNG WKRILELTVD DLVATLDIQY LIYNNTEVDL
2r6aA           ---------- ---------- ---------- ---------- ----------
                                                                      
TARGET          sss hhhhhh hhhh        sssss              s sssssssss 
2r6aA                                                                 


TARGET    496   FSSNVIFSSV INLICMNRIN VYDFWIPKTN NFFVNALLVH NSIEQDADVV
2r6aA     385   ---------- ---------- ---------- ---------- -sieqdadiv
                                                                      
TARGET          ssssssssss    hhhhhhh hhhhhhhhhh hhhhh   ss s  hhh sss
2r6aA                                                          hhh sss


TARGET    546   LFLYRDSYYQ HNLKQSNIDM CEVIVAKHRH GTIGMVNLIF NPNTVSFMNL
2r6aA     394   aflyrddykn ---------i ieiiiakqrn gpvgtvqlaf ikeynkfvnl
                                                                      
TARGET          ssss   sss    sss     sssssssss     sssssss ss  ssss  
2r6aA           ssss     s          s sssssssss     sssssss ss  ssss  


TARGET                                                                
2r6aA           -                                                     
                                                                      
TARGET                                                                
2r6aA

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: b2932ed54340981e97b79daa5086f1d2 on BC2-cluster at Sat Aug 30 08:30:04 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>b2932ed54340981e97b79daa5086f1d2
**************************************************************************************
>2r6aA Evalue:0 SeqID:24.874 Method:HHSEARCH Type:MODEL
-*****************************************************-----------------------**--****-


TEMPLATE ID    START          STOP           METHOD         STATUS         
2r6aA          6              595            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: b2932ed54340981e97b79daa5086f1d2 on gopt-67.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 08:35:57 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.