SWISS-MODEL Repository

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SWISS-MODEL Repository - Model Details

Model Overview

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916

Sequence

UniProt

O81852

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING

O81852: 3702.AT4G19710.2

Domain

Link to: [ InterPro ]

	AA_kinase
	Homoserine_dh
	ACT
	ACT
	NAD_binding_3

Model 3D Structure

	Model information:
	Modelled residue range:	554 to 912
	Based on template:	[ 1ebf ]
	Sequence Identity [%]:	39%
	Model date:	2013-02-19
	Revision date:	2013-01-30

Quaternary structure information:	[details]
Template (1ebf): DIMER Model built: SINGLE CHAIN

Ligand information:	[details]
Ligands in the template: NA: 1. Ligands in the model: NA: 1

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]

Alignment


TARGET    1       SRTTLAMG IVGPGLIGAT LLDQLRDQAA VLKQEFNIDL RVLGITGSKK
1ebfB     2       stkvvnva vigagvvgsa fldql----- -lamkstity nlvllaeaer
                                                                      
TARGET              ssssss sss  hhhhh hhhh               ss ssssss  ss
1ebfB               ssssss sss  hhhhh hhhhh       hh     ss sssssss  s


TARGET    49    MLL------S DIGIDLSRWR ELLNEKGTEA DLDK-FTQQV HGNHFIPNSV
1ebfB     44    sliskdfspl nvgsd---wk aalaasttkt lplddliahl kts---pkpv
                                                                      
TARGET          s            hhh    h hhhhh  sss                      
1ebfB           ssss                h hhhhh        hhhhhhhh h       ss


TARGET    92    V-VDCTADSA IASRYYDWLR KGIHVITPNK KANSGPLDQY LKLRDLQRKS
1ebfB     88    ilvdntssay iagfytkfve ngisiatpnk kafssdlatw kalfs-nkpt
                                                                      
TARGET            sss   hh hh   hhhhh     sss    hhh    hhh           
1ebfB           sssss   hh hh   hhhhh    ssss    hhh    hhh           


TARGET    141   YTHYFYEATV GAGLPIISTL RGLLETGDKI LRIEGICSGT LSYLFNNFV-
1ebfB     137   ngfvyheatv gaglpiisfl reiiqtgdev ekiegifsgt lsyifnefst
                                                                      
TARGET            sss            hhhh hhhhhh  ss ssssss  hh hhhhhh    
1ebfB             sss            hhhh hhhhhh  ss ssssss  hh hhhhhhhh  


TARGET    190   ---GDRSFSE VVTEAKNAGF TEPDPRDDLS GTDVARKVII LARESGLKLD
1ebfB     187   sqandvkfsd vvkvakklgy tepdprddln gldvarkvti vgrisgveve
                                                                      
TARGET                   h hhhhhhhh        hhhh    hhhhhhhh hhhhh     
1ebfB                  hhh hhhhhhhh               hhhhhhhhh hhhhh     


TARGET    237   L-ADLPIRSL VPEPLKGCTS VEEFMEKLPQ YDGDLAKERL DAENSGEVLR
1ebfB     237   sptsfpvqsl ipkplesvks adefleklsd ydkdltqlkk eaatenkvlr
                                                                      
TARGET                                  hhh   h    hhhhhhhh hhhhh  sss
1ebfB                                   hhh   h    hhhhhhhh hhhhh  sss


TARGET    286   YVGVVDAVNQ KGTVELRRYK KEHPFAQLAG SDNIIAFTTT RYKDHPLIVR
1ebfB     287   figkvdvatk svsvgiekyd yshpfaslkg sdnvisiktk rytn-pvviq
                                                                      
TARGET          sssssss  s sssssssss               ssssssss       ssss
1ebfB           sssssss  s sssssssss               ssssssss       ssss


TARGET    336   GPGAGAQVTA GGIFSDILRL ASYL                            
1ebfB     336   gagagaavta agvlgdviki aqrl-                           
                                                                      
TARGET          s    hhhhh hhhhhhhhhh hhh                             
1ebfB           s    hhhhh hhhhhhhhhh hhh

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Ligands in the template: NA: 1. 
Ligands in the template that will be assessed: NA2114. 
Model's ligands section 
NA2114 
All the residues interacting with the ligand are completely conserved between model and template. 
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.040 
Given the properties calculated previously, the ligand NA2114 will be included in the final model. 
NA2114: conservation:True, RMSD:True, included: True 
 
The new model with the included ligands was saved successfully.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template 
 1ebf is annotated as DIMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 1ebf.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 Analysis of evolutionary and family specific aspects revealed non-conservation of the oligomeric structure 
 Hence, the oligomeric structures of the target and the template cannot be assumed to be similar (=DIMER) 
 The target structure was calculated as SINGLE CHAIN 
 The corresponding reliability score is 0.408 (>0.5 indicates similarity) 
 To build the complex the following chains of the complex has been additionally identified: 1ebfA

Template Selection

 - Start SMR-Pipeline for:645b8edb253a32ced85aa7d697022b96 on BC2-cluster at Tue Feb 19 00:54:36
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
FATAL - No md5 found in hash for: 4dplB
FATAL - No md5 found in hash for: 4dplA
FATAL - No md5 found in hash for: 4dplD
FATAL - No md5 found in hash for: 4dplC
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with I found
 - No template with J found
 - No template with L found
 - No template with F found
 - No template with H found
 - No template with N found
 - No template with P found
 - No template with J found
 - No template with K found
 - No template with L found
 - No template with A found
 - No template with B found
 - No template with D found
 - No template with A found
 - No template with C found
 - No template with M found
 - No template with O found
 - No template with E found
 - No template with G found
 - No template with I found
 - No template with K found
 - No template with N found
 - No template with O found
 - No template with P found
 - No template with F found
 - No template with G found
 - No template with H found
 - No template with J found
 - No template with K found
 - No template with L found
 - No template with B found
 - No template with D found
 - No template with E found
 - No template with F found
 - No template with H found
 - No template with M found
 - No template with N found
 - No template with P found
 - No template with I found
 - No template with J found
 - No template with L found
 - No template with I found
 - No template with J found
 - No template with K found
 - No template with A found
 - No template with C found
 - No template with M found
 - No template with O found
 - No template with P found
 - No template with E found
 - No template with G found
 - No template with H found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with D found
 - No template with A found
 - No template with B found
 - No template with D found
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with A found
 - No template with C found
 - No template with A found
 - No template with B found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:4): model based on new templates
 - Send 4 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                                 *******************************
 - building model based on 1ebfB (554-912) was successful 
 -                                    ******
 - building model based on 2hmfA (406-472) was successful 
 -         ****************************************
 - building model based on 3c1nB (90-551) was successful 
 -                        ****************************
 - building model based on 3l76B (266-582) was not successful go to next best template
 -                        ****************************
 - building model based on 3l76A (266-582) was not successful go to next best template
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:645b8edb253a32ced85aa7d697022b96 on BC2-cluster at Tue Feb 19 01:14:49
2013

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

4gmg: NADP+ BOUND STRUCTURE OF A THIAZOLINYL IMINE REDUCTASE FROENTEROCOLITICA (IRP3)
Solved by: X-RAY, Resolution: 2.31A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

554-710	4gmgA	17%	>target -----------SRTTLAMGIVGPGLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTE--ADLDKFTQQVHGNHFIPNS-VVVD-CTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLRDLQRKSYTHYFYEATVGAGLPII------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ >4gmgA GLVPRGSHMPSASPKQRVLIVGAK-FGEMYLNAFMQ--------PPEGLELVGLLAQGS----------ARSRELAHAFGIPLYTSPEQITGM------PDIACIVVRSTVAGGAGTQLARHFLARGVHVIQE-H-PL--HPDDISSLQTLAQEQGCCYWI-NTFYPHTRAGRTWLRDAQQLRRCLAKTPPVVHATTSRQLLYSTLDLLLLALGVDTAAVECDVVGSFSDFHCLRLFWPEGEACLLLQRYLDPDDPDMHSLIMHRLLLGWPEGHLSLEASYGPVIWSSSLFVHSLYRRPEILRDPPGLTRSAAPLSWRDCCETVGPEGVSWLLHQLRSHLAGEHPPVACQNVHQIALSRLWQQILRKTGNAEIRRLTPPHHDRLAGFY [Model]
557-731	4gmgB	16%	>target TLAMGIVGPGLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTE--ADLDKFTQQVHGNHFIPNS-VVV-DCTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLRDLQRKSYTHYFYEATVGAGLPIISTL----RGLLE-TGDKILRIEGICS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4gmgB KQRVLIVGAK-FGEMYLNAFMQ--------PPEGLELVGLLAQGS----------ARSRELAHAFGIPLYTSPEQITGM------PDIACIVVRSTVAGGAGTQLARHFLARGVHVIQE-H-PL--HPDDISSLQTLAQEQGCCYWI-NTFYPHTRAGRTWLRDAQQLRRCLAKTPPVVHATTSRQLLYSTLDLLLLALGVDTAAVECDVVGSFSDFHCLRLFWPEGEACLLLQRYLDPDDPDMHSLIMHRLLLGWPEGHLSLEASYGPVIWSSSLFVAHSLYRRPEILRDPPGLTRSAAPLSWRDCCETVGPEGVSWLLHQLRSHLAGEHPPVACQNVHQIALSRLWQQILRKTGNAEIRRLTPPHHDRLAGFY [Model]
557-712	4gmgC	18%	>target TLAMGIVGPGLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGT--EADLDKFTQQVHGNHFIPNS-VVVD-CTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLRDLQRKSYTHYFYEATVGAGLPIIST-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4gmgC KQRVLIVGAK-FGEMYLNAFMQ--------PPEGLELVGLLAQGS----------ARSRELAHAFGIPLYTSPEQITGM------PDIACIVVRSTVAGGAGTQLARHFLARGVHVIQE-H-PL--HPDDISSLQTLAQEQGCCYW-INTFYPHTRAGRTWLRDAQQLRRCLAKTPPVVHATTSRQLLYSTLDLLLLALGVDTAAVECDVVGSFSDFHCLRLFWPEGEACLLLQRYLDPDDPDMHSLIMHRLLLGWPEGHLSLEASYGPVIWSSSLFVILRDPPGLTRSAAPLSWRDCCETVGPEGVSWLLHQLRSHLAGEHPPVACQNVHQIALSRLWQQILRKTGNAEIRRLTPPHHDRLAGFY [Model]
557-710	4gmgD	17%	>target TLAMGIVGPGLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGT--EADLDKFTQQVHGNHFIPNS-VVVD-CTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLRDLQRKSYTHYFYEATVGAGLPII----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4gmgD KQRVLIVGAK-FGEMYLNAFMQ--------PPEGLELVGLLAQGS----------ARSRELAHAFGIPLYTSPEQITGM------PDIACIVVRSTVAGGAGTQLARHFLARGVHVIQE-H-PL--HPDDISSLQTLAQEQGCCYWI-NTFYPHTRAGRTWLRDAQQLRRCLAKTPPVVHATTSRQLLYSTLDLLLLALGVDTAAVECDVVGSFSDFHCLRLFWPEGEACLLLQRYLDPDDPDMHSLIMHRLLLGWPEGHLSLEASYGPVIWSSSLFVALYRRPEILRDPPGLTRSAAPLSWRDCCETVGPEGVSWLLHQLRSHLAGEHPPVACQNVHQIALSRLWQQILRKTGNAEIRRLTPPHHDRLAGFY [Model]

4gmf: APO STRUCTURE OF A THIAZOLINYL IMINE REDUCTASE FROM YERSINENTEROCOLITICA (IRP3)
Solved by: X-RAY, Resolution: 1.85A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

557-711	4gmfA	17%	>target TLAMGIVGPGLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTE--ADLDKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLRDLQRKSYTHYFYEATVGAGLPIIS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4gmfA KQRVLIVGAK-FGEMYLNAFMQ--------PPEGLELVGLLAQGS----------ARSRELAHAFGIPLYTSPEQITGM------PDIACIVVRVAGGAGTQLARHFLARGVHVIQE-H-PL--HPDDISSLQTLAQEQGCCYWI-NTFYPHTRAGRTWLRDAQQLRRCLAKTPPVVHATTSRQLLYSTLDLLLLALGVDTAAVECDVVGSFSDFHCLRLFWPEGEACLLLQRYLDPDDPDMHSLIMHRLLLGWPEGHLSLEASYGPVIWSSSLFVAILRDPPGLTRSAAPLSWRDCCETVGPEGVSWLLHQLRSHLAGEHPPVACQNVHQIALSRLWQQILRKTGNAEIRRLTPPHHDRLAGFY [Model]
559-711	4gmfB	16%	>target -AMGIVGPGLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTE--ADLDKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLRDLQRKSYTHYFYEATVGAGLPIIS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4gmfB QRVLIVGAK-FGEMYLNAFM------------GLELVGLLAQGS----------ARSRELAHAFGIPLYTSPEQITG------MPD-IACIVVVAGGAGTQLARHFLARGVHVIQE-H-PL--HPDDISSLQTLAQEQGCCYWI-NTFYPHTRAGRTWLRDAQQLRRCLAKTPPVVHATTSRQLLYSTLDLLLLALGVDTAAVECDVVGSFSDFHCLRLFWPEGEACLLLQRYLDPDDPDMHSLIMHRLLLGWPEGHLSLEASYGPVIWSSSLFVAILRDPPGLTRSAAPLSWRDCCETVGPEGVSWLLHQLRSHLAGEHPPVACQNVHQIALSRLWQQILRKTGNAEIRRLTPPHHDRLAGFY [Model]
557-713	4gmfD	17%	>target TLAMGIVGPGLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGT--EADLDKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLRDLQRKSYTHYFYEATVGAGLPIISTL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ >4gmfD KQRVLIVGAK-FGEMYLNAFMQ--------PPEGLELVGLLAQGS----------ARSRELAHAFGIPLYTSPEQITG------MPDIACIV-VVAGGAGTQLARHFLARGVHVIQ-EHP-LH--PDDISSLQTLAQEQGCCYW-INTFYPHTRAGRTWLRDAQQLRRCLAKTPPVVHATTSRQLLYSTLDLLLLALGVDTAAVECDVVGSFSDFHCLRLFWPEGEACLLLQRYLDPDDPDMHSLIMHRLLLGWPEGHLSLEASYGPVIWSSSLFVLRDPPGLTRSAAPLSWRDCCETVGPEGVSWLLHQLRSHLAGEHPPVACQNVHQIALSRLWQQILRKTGNAEIRRLTPPHHDRLAGFY [Model]
557-710	4gmfC	16%	>target TLAMGIVGPGLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGT--EADLDKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLRDLQRKSYTHYFYEATVGAGLPII---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4gmfC KQRVLIVGAK-FGEMYLNAFM-----------QGLELVGLLAQGS----------ARSRELAHAFGIPLYTSPEQITG----M--PD-IACIVVVAGGAGTQLARHFLARGVHVIQE-H-PL--HPDDISSLQTLAQEQGCCYWI-NTFYPHTRAGRTWLRDAQQLRRCLAKTPPVVHATTSRQLLYSTLDLLLLALGVDTAAVECDVVGSFSDFHCLRLFWPEGEACLLLQRYLDPDDPDMHSLIMHRLLLGWPEGHLSLEASYGPVIWSSSLFVILRDPPGLTRSAAPLSWRDCCETVGPEGVSWLLHQLRSHLAGEHPPVACQNVHQIALSRLWQQILRKTGNAEIRRLTPPHHDRLAGFY [Model]

4dpk: STRUCTURE OF MALONYL-COENZYME A REDUCTASE FROM CRENARCHAEO
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

556-671	4dpkD	13%	>target TTLAMGIVGP-GLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTEADL-DKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4dpkD RTLKAAILGATGLVGIEYVRMLSNH---------PYIKPAYLAGKGS-----VGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYPGIPSLDVVDNILPLGDGYDAKTIKEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNEDTRPQVYFDRWAGDIPGMSVVVGRLKQVNKRMIRLVSLIHNTVRGAAGGGILAAELLVEKGYIEK [Model]
556-671	4dpkC	13%	>target TTLAMGIVGP-GLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTEADL-DKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4dpkC RTLKAAILGATGLVGIEYVRMLSNH---------PYIKPAYLAGKGS-----VGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYPGIPSLDVVDNILPLGDGYDAKTIKEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNEDTRPQVYFDRWAGDIPGMSVVVGRLKQVNKRMIRLVSLIHNTVRGAAGGGILAAELLVEKGYIEK [Model]
556-671	4dpkB	13%	>target TTLAMGIVGP-GLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTEADL-DKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4dpkB RTLKAAILGATGLVGIEYVRMLSNH---------PYIKPAYLAGKGS-----VGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYPGIPSLDVVDNILPLGDGYDAKTIKEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNEDTRPQVYFDRWAGDIPGMSVVVGRLKQVNKRMIRLVSLIHNTVRGAAGGGILAAELLVEKGYIEK [Model]
556-671	4dpkA	13%	>target TTLAMGIVGP-GLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTEADL-DKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4dpkA RTLKAAILGATGLVGIEYVRMLSNH---------PYIKPAYLAGKGS-----VGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYPGIPSLDVVDNILPLGDGYDAKTIKEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNEDTRPQVYFDRWAGDIPGMSVVVGRLKQVNKRMIRLVSLIHNTVRGAAGGGILAAELLVEKGYIEK [Model]

4hkt: CRYSTAL STRUCTURE OF A PUTATIVE MYO-INOSITOL DEHYDROGENASESINORHIZOBIUM MELILOTI 1021 (TARGET PSI-012312)
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

557-729	4hktC	14%	>target TLAMGIVGPGLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTE-ADLDKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--KILRIEGI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4hktC TVRFGLLGAGRIGKVHAKAVSG---------NADARLVAVADAFPA----------AAEAIAGAYGCEVRTID----AIEAAADI--DAVVICTPTDTHADLIERFARAGKAIFC-E-KPIDLDAERVRACLKVVSDTKAKL-MVGFNRRFDPHFMAVRKAIDDGRIGEVEMVTITSRDPSAPPVDYIKRSGGIFRDMTIHDFDMARFLLGEEPVSVTATAAVLIDKAIGDAGDYDSVSVILQTASGKQAIISNSRRATYGYDQRIEVHGSKGAVAAENQRPVSIEIATGDGYTRPPLHDFFMTRYTEAYANEIESFIAAIEKGAEIAPSGNDGLAALALADAAVRSVAEKRQISIA [Model]
557-729	4hktA	14%	>target TLAMGIVGPGLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTE-ADLDKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--KILRIEGI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4hktA TVRFGLLGAGRIGKVHAKAVSG---------NADARLVAVADAFPA----------AAEAIAGAYGCEVRTID----AIEAAADI--DAVVICTPTDTHADLIERFARAGKAIFC-E-KPIDLDAERVRACLKVVSDTKAKL-MVGFNRRFDPHFMAVRKAIDDGRIGEVEMVTITSRDPSAPPVDYIKRSGGIFRDMTIHDFDMARFLLGEEPVSVTATAAVLIDKAIGDAGDYDSVSVILQTASGKQAIISNSRRATYGYDQRIEVHGSKGAVAAENQRPVSIEIATGDGYTRPPLHDFFMTRYTEAYANEIESFIAAIEKGAEIAPSGNDGLAALALADAAVRSVAEKRQISIA [Model]
557-729	4hktD	14%	>target TLAMGIVGPGLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTE-ADLDKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--KILRIEGI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4hktD TVRFGLLGAGRIGKVHAKAVSG---------NADARLVAVADAFPA----------AAEAIAGAYGCEVRTID----AIEAAADI--DAVVICTPTDTHADLIERFARAGKAIFC-E-KPIDLDAERVRACLKVVSDTKAKL-MVGFNRRFDPHFMAVRKAIDDGRIGEVEMVTITSRDPSAPPVDYIKRSGGIFRDMTIHDFDMARFLLGEEPVSVTATAAVLIDKAIGDAGDYDSVSVILQTASGKQAIISNSRRATYGYDQRIEVHGSKGAVAAENQRPVSIEIATGDGYTRPPLHDFFMTRYTEAYANEIESFIAAIEKGAEIAPSGNDGLAALALADAAVRSVAEKRQISIA [Model]
557-731	4hktB	13%	>target -TLAMGIVGPGLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTE-ADLDKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGD--KILRIEGICS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4hktB MTVRFGLLGAGRIGKVHAKAVSG---------NADARLVAVADAFPA----------AAEAIAGAYGCEVRTID----AIEAAADI--DAVVICTPTDTHADLIERFARAGKAIFC-E-KPIDLDAERVRACLKVVSDTKAKL-MVGFNRRFDPHFMAVRKAIDDGRIGEVEMVTITSRDPSAPPVDYIKRSGGIFRDMTIHDFDMARFLLGEEPVSVTATAAVLIDKAIGDAGDYDSVSVILQTASGKQAIISNSRRATYGYDQRIEVHGSKGAVAAENQRPVSIEIATGDGYTRPPLHDFFMTRYTEAYANEIESFIAAIEKGAEIAPSGNDGLAALALADAAVRSVAEKRQISIA [Model]

4dpm: STRUCTURE OF MALONYL-COENZYME A REDUCTASE FROM CRENARCHAEOCOMPLEX WITH COA
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

556-671	4dpmA	13%	>target TTLAMGIVGP-GLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTEADL-DKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4dpmA RTLKAAILGATGLVGIEYVRMLSNH---------PYIKPAYLAGKGS-----VGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYPGIPSLDVVDNILPLGDGYDAKTIKEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNEDTRPQVYFDRWAGDIPGMSVVVGRLKQVNKRMIRLVSLIHNTVRGAAGGGILAAELLVEKGYIEK [Model]
556-671	4dpmB	13%	>target TTLAMGIVGP-GLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTEADL-DKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4dpmB RTLKAAILGATGLVGIEYVRMLSNH---------PYIKPAYLAGKGS-----VGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYPGIPSLDVVDNILPLGDGYDAKTIKEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNEDTRPQVYFDRWAGDIPGMSVVVGRLKQVNKRMIRLVSLIHNTVRGAAGGGILAAELLVEKGYIEK [Model]
556-671	4dpmD	13%	>target TTLAMGIVGP-GLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTEADL-DKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4dpmD RTLKAAILGATGLVGIEYVRMLSNH---------PYIKPAYLAGKGS-----VGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYPGIPSLDVVDNILPLGDGYDAKTIKEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNEDTRPQVYFDRWAGDIPGMSVVVGRLKQVNKRMIRLVSLIHNTVRGAAGGGILAAELLVEKGYIEK [Model]
556-671	4dpmC	13%	>target TTLAMGIVGP-GLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTEADL-DKFTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVITP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4dpmC RTLKAAILGATGLVGIEYVRMLSNH---------PYIKPAYLAGKGS-----VGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYPGIPSLDVVDNILPLGDGYDAKTIKEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNEDTRPQVYFDRWAGDIPGMSVVVGRLKQVNKRMIRLVSLIHNTVRGAAGGGILAAELLVEKGYIEK [Model]
557-670	4dpmF	12%	>target TLAMGIVGP-GLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTEADLDK-FTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVIT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4dpmF TLKAAILGATGLVGIEYVRMLSNH---------PYIKPAYLAGKGS-----VGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYPGIPSLDVVDNILPLGDGYDAKTIKEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNEDTRPQVYFDRWAGDIPGMSVVVGRLKQVNKRMIRLVSLIHNTVRGAAGGGILAAELLVEKGYIEK [Model]
557-670	4dpmE	12%	>target TLAMGIVGP-GLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLLSDIGIDLSRWRELLNEKGTEADLDK-FTQQVHGNHFIPNSVVVDCTADSAIASRYYDWLRKGIHVIT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4dpmE TLKAAILGATGLVGIEYVRMLSNH---------PYIKPAYLAGKGS-----VGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYPGIPSLDVVDNILPLGDGYDAKTIKEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNEDTRPQVYFDRWAGDIPGMSVVVGRLKQVNKRMIRLVSLIHNTVRGAAGGGILAAELLVEKGYIEK [Model]

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.