SWISS-MODEL Repository - Model Details

Model Overview
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1
92

Sequence
UniProt O87387
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
SoxD

Model 3D Structure
Model information:
Modelled residue range: 3 to 83
Based on template: [ 1vrq ]  
Sequence Identity [%]: 40%
Model date: 2008-09-01
Revision date: 2008-09-01

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-01. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    3        SLVPCPN CGRRPKEEFT IKGAA-LSRP EAD-ADS-ID WFDYVYLREN
1vrqD     1     m--mliecpn cgprnenefk yggeahvayp edpnalsdke wsrylfyrgn
                                                                      
TARGET             sssss    sssss   s sssss                 hhhhh     
1vrqD              sssss    sssss   s sssss             hhh hhhhh     


TARGET    47    PRGAYEEYWH HTSGCRRWLV VARDTVTHEI AACCDAA -- ---       
1vrqD     49    kkgifaerwv hsggcrkwfn alrdtvsyef kavyragear pql       
                                                                      
TARGET            ssssssss s     ssss sssss   ss ssss                 
1vrqD             ssssssss s     ssss sssss   ss ssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 147186ab2e15f18d485e40b55150f658 on BC2-cluster at Mon Sep  1 05:23:51 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>147186ab2e15f18d485e40b55150f658
********************************************************************************************
>1vrqD Evalue:7.8E-29 SeqID:40.476 Method:HHSEARCH Type:MODEL
--*********************************************************************************---------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1vrqD          3              83             HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 147186ab2e15f18d485e40b55150f658 on gopt-21.cluster.bc2.ch BC2-Cluster at
Mon Sep  1 05:25:14 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.