SWISS-MODEL Repository

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SWISS-MODEL Repository - Model Details

Model Overview

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272

Sequence

UniProt

O88696

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING

O88696: 10090.ENSMUSP000

Domain

Link to: [ InterPro ]

CLP_protease

Model 3D Structure

	Model information:
	Modelled residue range:	53 to 248
	Based on template:	[ 1tg6 ]
	Sequence Identity [%]:	94%
	Model date:	2013-02-23
	Revision date:	2013-01-30

Quaternary structure information:	[details]
Template (1tg6): HEPTAMER Model: SINGLE CHAIN

Ligand information:	[details]
Ligands in the template: ALA: 1, GOL: 2, VAL: 1. Ligands in the model: none.

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]

Alignment


TARGET    1     PLIPIVVEQT GRGERAYDIY SRLLRERIVC VMGPIDDSVA SLVIAQLLFL
1tg6F     1     plipivv--- ------ydiy srllrerivc vmgpiddsva slviaqllfl
                                                                      
TARGET                             hh hhhh  ssss sss   hhhh hhhhhhhhhh
1tg6F                              hh hhhh  ssss sss   hhhh hhhhhhhhhh


TARGET    51    QSESNKKPIH MYINSPGGVV TAGLAIYDTM QYILNPICTW CVGQAASMGS
1tg6F     51    qsesnkkpih myinspggvv taglaiydtm qyilnpictw cvgqaasmgs
                                                                      
TARGET          hhh     ss sssssss  h hhhhhhhhhh hh   sssss sssssss hh
1tg6F           hhh     ss sssssss  h hhhhhhhhhh hh   sssss ssssssshhh


TARGET    101   LLLAAGSPGM RHSLPNSRIM IHQPSGGARG QATDIAIQAE EIMKLKKQLY
1tg6F     101   lllaagtpgm rhslpnsrim ihqpsggarg qatdiaiqae eimklkkqly
                                                                      
TARGET          hhhh     s ssss   sss s           hhhhhhhhh hhhhhhhhhh
1tg6F           hhhh     s ssss   sss s           hhhhhhhhh hhhhhhhhhh


TARGET    151   NIYAKHTKQS LQVIESAMER DRYMSPMEAQ EFGILDKVLV HPPQDG    
1tg6F     151   niyakhtkqs lqviesamer drymspmeaq efgildkvlv hppqdg-   
                                                                      
TARGET          hhhhhhh    hhhhhhh     sss hhhhh hh    sss            
1tg6F           hhhhhhh    hhhhhhhh    sss hhhhh hh    sss

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Ligands in the template: ALA: 1, GOL: 2, VAL: 1. 
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page. 
No ligands were included in the model.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template 
 1tg6 is annotated as HEPTAMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 1tg6.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 Analysis of evolutionary and family specific aspects revealed conservation of the oligomeric structure 
 Hence, the oligomeric structures of the target and the template can be assumed to be similar (=HEPTAMER) 
 The corresponding reliability score is 0.774 (>0.5 indicates similarity) 
 To build the complex the following chains of the complex has been additionally identified: 1tg6A 1tg6D 1tg6C 1tg6B 1tg6E 1tg6G  
 Unfortunately, we were not able to built the model as HEPTAMER. 
 Thus, the model was built as single chain.

Template Selection

 - Start SMR-Pipeline for:59a6589ab1d3e75c4d871ea974fd3a68 on BC2-cluster at Sat Feb 23 04:38:42
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1
 - But still uncovered regions of the target sequence detected, go for: HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with H found
 - No template with A found
 - No template with C found
 - No template with B found
 - No template with E found
 - No template with D found
 - No template with G found
 - No template with F found
 - No template with I found
 - No template with K found
 - No template with J found
 - No template with L found
 - No template with M found
 - No template with N found
 - No template with G found
 - No template with V found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with I found
 - No template with K found
 - No template with L found
 - No template with M found
 - No template with N found
 - No template with S found
 - No template with T found
 - No template with C found
 - No template with G found
 - No template with H found
 - No template with I found
 - No template with L found
 - No template with N found
 - No template with A found
 - No template with B found
 - No template with D found
 - No template with E found
 - No template with F found
 - No template with J found
 - No template with K found
 - No template with M found
 - No template with K found
 - No template with N found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with D found
 - No template with E found
 - No template with F found
 - No template with G found
 - No template with H found
 - No template with I found
 - No template with J found
 - No template with L found
 - No template with M found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with C found
 - No template with E found
 - No template with F found
 - No template with A found
 - No template with B found
 - No template with D found
 - No template with G found
 - No template with A found
 - No template with B found
 - No template with D found
 - No template with G found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                 **********************************************************
 - Oligomeric modeling of 1tg6F was not successful, fall back to monomeric modeling
 - building model based on 1tg6F (53-248) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:59a6589ab1d3e75c4d871ea974fd3a68 on BC2-cluster at Sat Feb 23 04:57:50
2013

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

1tg6: CRYSTALLOGRAPHY AND MUTAGENESIS POINT TO AN ESSENTIAL ROLEFOR THE N-TERMINUS OF HUMAN MITOCHONDRIAL CLPP
Solved by: X-RAY, Resolution: 2.10A, Identified by BLAST
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

53-257	1tg6E	95%	>target PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGEDEPELVQK >1tg6E PLIPIVV---------YDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGEDEPTLVQK [Model]
53-255	1tg6G	95%	>target PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGEDEPELV >1tg6G PLIPIVV---------YDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGEDEPTLV [Model]
53-245	1tg6A	95%	>target PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPP >1tg6A PLIPIVV---------YDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPP [Model]
53-245	1tg6D	95%	>target PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPP >1tg6D PLIPIVV---------YDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPP [Model]
53-244	1tg6C	95%	>target PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHP >1tg6C PLIPIVV---------YDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHP [Model]
53-244	1tg6B	95%	>target PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHP >1tg6B PLIPIVV---------YDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHP [Model]
53-248	1tg6F	95%	>target PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDG >1tg6F PLIPIVV---------YDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDG [Model]

4gm2: THE CRYSTAL STRUCTURE OF A PEPTIDASE FROM PLASMODIUM FALCI
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

72-243	4gm2A	36%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGG-ARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4gm2A PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-243	4gm2E	36%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGG-ARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4gm2E PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-243	4gm2G	34%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4gm2G PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQS-----------EIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-243	4gm2C	33%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4gm2C PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQN---------------KEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-243	4gm2F	34%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4gm2F PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLN------------IEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-243	4gm2B	33%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4gm2B PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQ-----------------EIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-243	4gm2D	32%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4gm2D PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLN-------------------IMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]

4hnk: CRYSTAL STRUCTURE OF AN ENZYME
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

72-243	4hnkA	35%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4hnkA PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSII--PFNNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-243	4hnkE	35%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4hnkE PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYS---IIPFNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-243	4hnkG	34%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4hnkG PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQE------------IQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-243	4hnkC	32%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4hnkC PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNN----------------KEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-243	4hnkF	32%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4hnkF PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNN----------------KEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-242	4hnkB	32%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLV >4hnkB PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLN-------------------IMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILE [Model]
73-243	4hnkD	32%	>target SRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4hnkD SLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLN-------------------IMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-243	4hnkH	35%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4hnkH PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYS---IIPFNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-243	4hnkL	34%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4hnkL PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNSII------PFNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-242	4hnkJ	33%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLV >4hnkJ PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQN---------------KEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILE [Model]
72-243	4hnkI	33%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4hnkI PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQ-----------------EIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-243	4hnkN	32%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4hnkN PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSI-----------------MNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK [Model]
72-243	4hnkK	31%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4hnkK PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLN-------------------IMNTKKKVIEIISKNTEKDTNVISNVLEK--YFNADEAVDFKLIDHILEK [Model]
72-243	4hnkM	29%	>target YSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG----------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH >4hnkM PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNTK----------------------KKVIEIISKNTEKDTNVI----SNVLYFNADEAVDFKLIDHILEK [Model]

3r6h: CRYSTAL STRUCTURE OF AN ENOYL-COA HYDRATASE (ECHA3) FROM MMARINUM
Solved by: X-RAY, Resolution: 1.75A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

123-242

3r6hA

14%

4hc8: CRYSTAL STRUCTURE OF PROBABLE ENOYL-COA HYDRATASE ECHA3 (RNYSGRC-019494) FROM MYCOBACTERIUM TUBERCULOSIS H37RV
Solved by: X-RAY, Resolution: 2.51A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	86-242	4hc8A	12%	>target ----------------------PIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVT---------------------AGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGAR---GQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLV---------------------------------------------------------- >4hc8A DPVSYTRKDSIAVISMDDGKVNALGPAMQQALNAAIDNADR-DDV--GALVITGNGRVFSGGFDLKILTSGEVQPAIDMLRGGFELAYRLLSYPKPVVMACTGHAIAMGAFLLSCGD--HRVAAHAYNIQANEVAIGMTIPYAALEI------------------MKLRLTR--SAYQQATGLAKTFFGETALAAGFIDEIALPEVVVSRAEEAAREFAGLNQHAHAATKLRSRADALTAIRAGIDGIAAEFGLAENLYFQ [Model]
	86-242	4hc8B	13%	>target -----------------------PIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVV---------------------TAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGAR--GQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLV---------------------------------------------------- >4hc8B SDPVSYTRKDSIAVISMDDGKVNALGPAMQQALNAAIDNADR-D-D-VGALVITGNGRVFSGGFDLKILTSGEVQPAIDMLRGGFELAYRLLSYPKPVVMACTGHAIAMGAFLLSCGD--HRVAAHAYNIQANEVAIGMTIPYAALEI-----------------MKLRLTR--SAYQQATGLAKTFFGETALAAGFIDEIALPEVVVSRAEEAAREFAGLNQHAHAATKLRSRADALTAIRAGIDGIAAEFGLA [Model]

3sll: CRYSTAL STRUCTURE OF A PROBABLE ENOYL-COA HYDRATASE/ISOMERMYCOBACTERIUM ABSCESSUS
Solved by: X-RAY, Resolution: 2.35A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

86-243	3sllF	10%	>target ------------------------PIDDSVASLVIAQLLFLQSESNKKPIH-MYINSPG------GVVT--------------AGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGAR-G--QATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH------------------------------------------------------------------------------ >3sllF SFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISH-DN--DVRAVVITGAGKGFCSGIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACD--VRVASQDAYFRAAGINNGLTASELGLSYL-----------------LPRAIGT--SRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFRDKR [Model]
86-243	3sllD	10%	>target -----------------------PIDDSVASLVIAQLLFLQSESNKKPIHMY-INSPG------GVV---------------TAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGA-RG--QATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH------------------------------------------------------------------------------ >3sllD FVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISH-DN--DVRAVVITGAGKGFCSGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACD--VRVASQDAYFRAAGINNGLTASELGLSYLL-----------------PRAIG--TSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFRDKR [Model]
87-243	3sllC	11%	>target -------------------------IDDSVASLVIAQLLFLQSESNKKPIH-MYINSPGGVV------------------TAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGG-ARG--QATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH------------------------------------------------------------------------------ >3sllC SFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISH-DN--DVRAVVITGAGKGFCSPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACD--VRVASQDAYFRAAGINNGLTASELGLSYL-----------------LPRAIG--TSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFRDKR [Model]
87-243	3sllB	10%	>target --------------------------IDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVT----------------------AGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGA-RGQ--ATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH------------------------------------------------------------------------------ >3sllB MSFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISH-DNDVRA-VVITGAGKGFCSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACD--VRVASQDAYFRAAGINNGLTASELGLSYLL-----------------PRAIGT--SRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFRDKR [Model]
86-243	3sllE	11%	>target ------------------------PIDDSVASLVIAQLLFLQSESNKKPI-HMYINSPGGVVTAGL-----------------------AIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGA-RGQ--ATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIES-AMERDRYMSPMEAQEFGILDKVLVH------------------------------------------------------------------------------ >3sllE SFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISH-DN--DVRAVVITGAGKGFCSGADPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACD--VRVASQDAYFRAAGINNGLTASELGLSYL-----------------LPRAIGTSR--ASDIMLTG-RDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFRDKR [Model]
87-242	3sllA	10%	>target -------------------------IDDSVASLVIAQLLFLQSESNKKPIH-MYINSPGGVVTAG----------------------LAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGG-ARG--QATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLV------------------------------------------------------------------------------- >3sllA SFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISH---DNDVRAVVITGAGKGFCSGGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACD--VRVASQDAYFRAAGINNGLTASELGLSYLL-----------------PRAIGT--SRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFRDKR [Model]

3isa: CRYSTAL STRUCTURE OF PUTATIVE ENOYL-COA HYDRATASE/ISOMERASFROM BORDETELLA PARAPERTUSSIS
Solved by: X-RAY, Resolution: 1.76A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

87-243	3isaB	9%	>target --------------------------IDDSVASLVIAQLLFLQSESNKKPIH-MYINSPGGVVTA---------------------GLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH------------------------------------------------------------ >3isaB ASLPLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAA--HRE--QVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACK--WRYCTPEAGFRMPGLKFGLVLGT----------RR--------FRDIVGA--DQALSILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLRDDHDDADLAALARSAAQPGFKARIRDYLAQ [Model]
86-243	3isaC	9%	>target ------------------------PIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGG------VV---------------TAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH------------------------------------------------------------- >3isaC SLPLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAAH--REQ-VPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACK--WRYCTPEAGFRMPGLKFGLVLG-T---------R--------RFRDIVGA--DQALSILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLRDDHDDADLAALARSAAQPGFKARIRDYLAQP [Model]
86-243	3isaE	9%	>target ------------------------PIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGG------VV---------------TAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH------------------------------------------------------------- >3isaE SLPLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAAH--REQ-VPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACK--WRYCTPEAGFRMPGLKFGLVLG-T---------R--------RFRDIVGA--DQALSILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLRDDHDDADLAALARSAAQPGFKARIRDYLAQP [Model]
87-243	3isaF	9%	>target ----------------------------IDDSVASLVIAQLLFLQSESNKKPIH-MYINSPGGVVTAG---------------------LAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH------------------------------------------------------------- >3isaF LSASLPLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAA--HRE--QVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACK--WRYCTPEAGFRMPGLKFGLVLG---T-------R--------RFRDIVGA--DQALSILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLRDDHDDADLAALARSAAQPGFKARIRDYLAQP [Model]
86-243	3isaD	10%	>target --------------------------PIDDSVASLVIAQLLFLQSESNKKPIH-MYINSPGGVVTAG---------------------LAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH-------------------------------------------------------------- >3isaD SASLPLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAA--HRE--QVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACK--WRYCTPEAGFRMPGLKFGLVLG-T---------RR--------FRDIVGA--DQALSILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLRDDHDDADLAALARSAAQPGFKARIRDYLAQPA [Model]
86-243	3isaA	9%	>target --------------------------PIDDSVASLVIAQLLFLQSESNKKPIH-MYINSPGGVVTA---------------------GLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH------------------------------------------------------------ >3isaA SASLPLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAA--HRE--QVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACK--WRYCTPEAGFRMPGLKFGLVLG-T-----------------RRFRDIVGA--DQALSILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLRDDHDDADLAALARSAAQPGFKARIRDYLAQ [Model]

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.