SWISS-MODEL Repository - Model Details

Model Overview
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1
529

Sequence
UniProt O88873
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
SAND

Model 3D Structure
Model information:
Modelled residue range: 86 to 175
Based on template: [ 1oqj ]  
Sequence Identity [%]: 77%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    86      EAEIVYPI TCGDSRANLI WRKFVCPGIN VKCVQYDEHV ISPKEFVHLA
1oqjA     90      dmeiaypi tcgeskaill wkkfvcpgin vkcvkfndql ispkhfvhla
                                                                      
TARGET               sssss ss  ssssss s            ssss  ss s hhhhhhhh
1oqjA                sssss ss  ssssss s            ssss  ss s hhhhhhhh


TARGET    134   GKSTLKDWKR AIRMNGIMLR KIMDSGELDF YQHDKVCSNT CR        
1oqjA     138   gkstlkdwkr airlggimlr kmmdsgqidf yqhdkvcsnt cr-       
                                                                      
TARGET                 hhh h        h hhhh                            
1oqjA                  hhh h        h hhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 64665d5219995d671cccc1550495db7b on BC2-cluster at Sat Aug 30 01:55:34 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>64665d5219995d671cccc1550495db7b
****************************************************************************
>1oqjA Evalue:2.52755e-42 SeqID:77.778 Method:BLAST Type:MODEL
------------*************---------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1oqjA          86             175            BLAST          BUILT          

FINISHED PIPELINE ON ID: 64665d5219995d671cccc1550495db7b on gopt-49.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 02:03:42 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.