SWISS-MODEL Repository - Model Details

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1
884

Sequence
UniProt O97583
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Sulfotransfer_1
HSNSD

Model 3D Structure
Model information:
Modelled residue range: 580 to 879
Based on template: [ 1nst ]  
Sequence Identity [%]: 64%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    580    PLWQNPCDD KRHKDIWSKE KTCDRLPKFL IVGPQKTGTT AIHFFLSLHP
1nstA     579   dplwqdpc-- ---------- --cdrfpkll iigpqktgtt alylflgmhp
                                                                      
TARGET                ssss s    sssss        sss ss      hh hhhhhhh   
1nstA                                        sss ss      hh hhhhhhh   


TARGET    629   AVTSSFPSPS TFEEIQFFNG PNYHKGIDWY MDFFPVPSNA STDFLFEKSA
1nstA     629   dlssnypsse tfeeiqffng hnyhkgidwy meffpi---- -sdfyfeksa
                                                                      
TARGET                                 hhh   hhh hh               sss 
1nstA                                  hhh   hhh hh               sss 


TARGET    679   TYFDSEVVPR RGAALLPRAK IITVLTNPAD RAYSWYQHQR AHGDPVALNY
1nstA     679   nyfdsevapr raaallpkak vltilinpad rayswyqhqr ahddpvalky
                                                                      
TARGET          hhh   hhhh hhhhh    s sssss  hhh hhhhhhhhhh h   hhhh  
1nstA           hhh   hhhh hhhhh    s sssss  hhh hhhhhhhhhh h   hhhh  


TARGET    729   TFYQVITASS QDPPALRSLQ NRCLVPGYYS THLQRWLTYY PSGQLLIVDG
1nstA     729   tfhevitags dassklralq nrclvpgwya thierwlsay hanqilvldg
                                                                      
TARGET           hhhhh        hhhhhhh hhhhhh   h hhhhhhhhh     sssssss
1nstA            hhhhh        hhhhhhh hhhhhh   h hhhhhhhhh     sssssss


TARGET    779   QELRTNPAAS MEIIQKFLGI TPFLNYTRTL RFDEDKGFWC QGLEGGKTRC
1nstA     779   kllrtepakv mdmvqkflgv tntidyhktl afdpkkgfwc qlleggktkc
                                                                      
TARGET          hhhh   hhh hhhhhhhh           ss ssss  ssss sss   sss 
1nstA           hhhh   hhh hhhhhhhh              ssss  ssss sss   sss 


TARGET    829   LGKSKGRKYP DMDAESRLFL TDFFRNHNLE LSKLLSRLGQ PVPSWLREEL
1nstA     829   lgkskgrkyp emdldsrafl kdyyrdhnie lskllykmgq tlptwlredl
                                                                      
TARGET                        hhhhhhh hhhhhhhhhh hhhhhhhh      hhhhhhh
1nstA                         hhhhhhh hhhhhhhhhh hhhhhhhh      hhhhhhh


TARGET    879   Q                                                     
1nstA     879   q-                                                    
                                                                      
TARGET                                                                
1nstA

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 1aac8e0165cfbed7fed9ea78e65b4255 on BC2-cluster at Sun Aug 31 01:34:02 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>1aac8e0165cfbed7fed9ea78e65b4255
*********************************************************************************
>1nstA Evalue:1.0452e-119 SeqID:64.333 Method:BLAST Type:MODEL
-------------------------------------------------------*************************-


TEMPLATE ID    START          STOP           METHOD         STATUS         
1nstA          580            879            BLAST          BUILT          

FINISHED PIPELINE ON ID: 1aac8e0165cfbed7fed9ea78e65b4255 on gopt-68.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 01:40:28 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.