SWISS-MODEL Repository - Model Details

Model Overview
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1
461

Sequence
UniProt P02710
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Neur_chan_LBD
Neur_chan_memb
Neur_chan_memb

Model 3D Structure
Model information:
Modelled residue range: 25 to 452
Based on template: [ 2bg9 ]  
Sequence Identity [%]: 37%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    25      SEHETRLV ANLLENYNKV IRPVEHHTHF VDITVGLQLI QLISVDEVNQ
2bg9B     1       svmedtll svlfenynpk vrpsqtvgdk vtvrvgltlt sllilnekne
                                                                      
TARGET               hhhhh hhhhhh                ssssssssss ssssss   s
2bg9B                hhhhh hhhhhh                  ssssssss ssssss   s


TARGET    73    IVETNVRLRQ QWIDVRLRWN PADYGGIKKI RLPSDDVWLP DLVLYNNADG
2bg9B     49    emttsvflnl awtdyrlqwd paayegikdl sipsddvwqp divlmnnndg
                                                                      
TARGET          ssssssssss ssss        hhhh  sss ss         sssss sss 
2bg9B           ssssssssss ssss        hhhh                 sssss sss 


TARGET    123   DFAIVHMTKL LLDYTGKIMW TPPAIFKSYC EIIVTHFPFD QQNCTMKLGI
2bg9B     99    sfeitlhvnv lvqhtgavsw hpsaiyrssc tikvmyfpfd wqnctmvfks
                                                                      
TARGET                   s ssss sssss ssssssssss               sssssss
2bg9B                      sss  sssss ssssssssss               sssssss


TARGET    173   WTYDGTKVSI SPESDR-PDL STFMESGEWV MKDYRGWKHW VYYTCCPDTP
2bg9B     149   ytydtsevil qhaldaminq daftengqws iehkpsrkn- --wrsddp-s
                                                                      
TARGET          s       ss s                       sssssss            
2bg9B           s       ss s                       sssssss            


TARGET    222   YLDITYHFIM QRIPLYFVVN VIIPCLLFSF LTGLVFYLPT DSGEKMTLSI
2bg9B     204   yedvtfylii qrkplfyivy tivpcilisi lailvfylpp dagekmslsi
                                                                      
TARGET            sssssss          hh hhhhhhhhhh hhhhhhhh     ssss hhh
2bg9B             sssssss         h    hhhhhhhhh hhhhhhhh          hhh


TARGET    272   SVLLSLTVFL LVIVELIPST SSAVPLIGKY MLFTMIFVIS SIIITVVVIN
2bg9B     254   sallaltvfl llladkvpet slsvpiiisy lmfimilvaf svilsvvvln
                                                                      
TARGET          hhhhhhhhhh hhhhhhhhhh h        h hhhhhhhhhh hhhhhhhhhh
2bg9B           hhhhhhhhhh hhhhhhhhhh h        h hhhhhhhhhh hhhhhhhhhh


TARGET    322   THHRSPSTHT MPQWVRKIFI DTIPNVMFFS TMKRASKEKQ ENKIFADDID
2bg9B     304   lhhrspnthe aveaik---- ---------- ---------- ----------
                                                                      
TARGET            ssssss        hhhhh hhhhhhhhhh hhhhhhhhh        hhhh
2bg9B           hhh        hhhhhh                                     


TARGET    372   ISDISGKQVT GEVIFQTPLI KNPDVKSAIE GVKYIAEHMK SDEESSNAAE
2bg9B     410   ---------- ---------- ---------- ---yiaeqle sasefddlkk
                                                                      
TARGET          hhhhhhhhhh hhhh                   hhhhhhhhh hhhhhhhhhh
2bg9B                                               hhhhhhh hhhhhhhhhh


TARGET    422   EWKYVAMVID HILLCVFMLI CIIGTVSVFA G -------- ---       
2bg9B     427   dwqyvamvad rlflyifitm csigtfsifl dashnvppdn pfa       
                                                                      
TARGET          hhh    hhh hhhhhhhhhh hhh   hhhh h                    
2bg9B           hhh    hhh hhhhhhhhhh hhh   hhhh hhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 046853ee72a803904039d0b9ebb86de1 on BC2-cluster at Fri Aug 29 21:01:13 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  3 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>046853ee72a803904039d0b9ebb86de1
*****************************************************************************
>1oedA Evalue:1.14652e-40 SeqID:100.000 Method:BLAST Type:PDB
---------------------------------------***************-----------------------
>1oedA Evalue:3.56636e-11 SeqID:100.000 Method:BLAST Type:PDB
-----------------------------------------------------------------------******
>2bg9A Evalue:1.05716e-176 SeqID:96.825 Method:BLAST Type:MODEL
----*****************************************************--------------------
>2bg9B Evalue:0 SeqID:37.529 Method:HHSEARCH Type:MODEL
----****************************************************-----------********--


TEMPLATE ID    START          STOP           METHOD         STATUS         
1oedA          235            326            BLAST          PDB            
1oedA          427            461            BLAST          PDB            
2bg9A          25             339            BLAST          BUILT          
2bg9B          25             452            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 046853ee72a803904039d0b9ebb86de1 on gopt-41.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 21:07:29 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.