SWISS-MODEL Repository - Model Details

Model Overview
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1
458

Sequence
UniProt P03006
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
DnaB
DnaB_C

Model 3D Structure
Model information:
Modelled residue range: 4 to 422
Based on template: [ 2r6a ]  
Sequence Identity [%]: 30%
Model date: 2008-09-03
Revision date: 2008-09-03

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-03. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    4              D IEASVIGGLL IGGLTPTASD VLATLEPEAF SIPLYRKAFE
2r6aA     8     rippqsi--e aeqavlgavf ldp--aalvp aseilipedf yraahqkifh
                                                                      
TARGET                     hhhhhhhhhh hh     hhh hhhh         hhhhhhhh
2r6aA                 h  h hhhhhhhhhh      hhhhh hhhh         hhhhhhhh


TARGET    45    VIRKQARNRN LIDGLMVAEE C--------- -GDEYATAVM MTARSCPSAA
2r6aA     54    amlrvadrge pvdlvtvtae laaseqleei ggvsylse-- -ladavptaa
                                                                      
TARGET          hhhhhhh       hhhhhhh                 sss   sss       
2r6aA           hhhhhhh       hhhhhhh hh   hhhhh    hhhhh    hhh      


TARGET    85    NLKGYAGMVA DSYQRRQVLQ LLDEMREPIS NGTLDASGRA MDELVKRLSS
2r6aA     101   nveyyarive eksvlrrlir tatsiaqdgy tred-eidvl ldeadrkime
                                                                      
TARGET           hhhhhhhhh hhhhhhhhhh hhhhhhhhhh        hhh hhhhhhhhhh
2r6aA             hhhhhhhh hhhhhhhhhh hhhhhhhhhh        hhh hhhhhhhhhh


TARGET    135   IRKPRNEVKP VRLGEIINDY TDTLDRRLRN GEESDTLKTG IEELDAITGG
2r6aA     150   vsqrkhsgaf knikdilvqt ydniemlhnr dgeitgiptg fteldrmtsg
                                                                      
TARGET          h            hhhhhhhh hhhhhhhhh              hhhhhhh  
2r6aA           h            hhhhhhhh hhhhhhhh               hhhhhhh  


TARGET    185   MNAEDLVIIA ARPGMGKTEL ALKIAEGVAS RVIPGSGVRR GVLIFSMEMS
2r6aA     200   fqrsdliiva arpsvgktaf alniaqnvat kt------ne nvaifslems
                                                                      
TARGET              ssssss s     hhhh hhhhhhhhhh             sssss    
2r6aA               ssssss s     hhhh hhhhhhhhhh h          ssssss    


TARGET    235   AIQVVERGIA GAGMMSVSVL RNPSRMDDEG WARVASGMKL LAELDVWVVD
2r6aA     244   aqqlvmrmlc aegninaqnl rtg-kltped wgkltmamgs lsnagiyidd
                                                                      
TARGET          hhhhhhhhhh hhh   hhhh h      hhh hhhhhhhhhh hh  sssss 
2r6aA           hhhhhhhhhh hhh   hhhh h      hhh hhhhhhhhhh hh  sssss 


TARGET    285   ASRLSVEEIR SISERHKQEH PNLSLIMADY LGLIEKPKAE RNDLAIAHIS
2r6aA     293   tpsirvsdir akcrrlkqes g-lgmividy lqliqgsg-- rrqqevseis
                                                                      
TARGET               hhhhh hhhhhhhh       sssss                hhhhhhh
2r6aA                hhhhh hhhhhh         sssss               hhhhhhhh


TARGET    335   GSLKAMAKDL KTPVISLSQL SRDVEKRPNK RPTNADLRDS GSIEQDADSI
2r6aA     344   rslkalarel evpvialsql srsveqr--- rpmmsdires gsieqdadiv
                                                                      
TARGET          hhhhhhhhhh   ssssss      hh          h         hhh sss
2r6aA           hhhhhhhhhh   ssssss      hh          h         hhh sss


TARGET    385   IMLYREAVYD ENSSAAPFAE IIVTKNRFGS LGTVYQRF - --------  
2r6aA     394   aflyrddykn -------iie iiiakqrngp vgtvqlafik eynkfvnl  
                                                                      
TARGET          ssss          hh   ss sssssss     sssss               
2r6aA           ssss     s        sss sssssss     sssssssss   ssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 3e1099fb7129e66c3d73b55100613755 on BC2-cluster at Wed Sep  3 15:04:20 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>3e1099fb7129e66c3d73b55100613755
*****************************************************************************
>2r6aA Evalue:0 SeqID:30.536 Method:HHSEARCH Type:MODEL
************************************-*****************************-***-------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2r6aA          4              422            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 3e1099fb7129e66c3d73b55100613755 on gopt-66.cluster.bc2.ch BC2-Cluster at
Wed Sep  3 15:08:23 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.