SWISS-MODEL Repository - Model Details

Model Overview
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Sequence
UniProt P03305
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Rhv
Rhv
Rhv
Peptidase_C3
RdRP_1
RNA_helicase
Peptidase_C28
VP4_2

Model 3D Structure
Model information:
Modelled residue range: 291 to 504
Based on template: [ 1fod ]  
Sequence Identity [%]: 99%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    291     EETTLLED RILTTRNGHT TSTTQSSVGV TYGYATAEDF VSGPNTSGLE
1fod2     5       eettlled rilttrnght tsttqssvgv tygyataedf vsgpntsgle
                                                                      
TARGET             sss sss   sssss  s ssss       sss                  
1fod2              sss sss   sssss  s ssss       sss                  


TARGET    339   TRVVQAERFF KTHLFDWVTS DSFGRCHLLE LPTDHKGVYG SLTDSYAYMR
1fod2     53    trvvqaerff kthlfdwvts dsfgrchlle lptdhkgvyg sltdsyaymr
                                                                      
TARGET          sss      s sssssss        ssssss s      hhh hhhhssssss
1fod2           sss      s sssssss        ssssss s      hhh hh  ssssss


TARGET    389   NGWDVEVTAV GNQFNGGCLL VAMVPELYSI QKRELYQLTL FPHQFINPRT
1fod2     103   ngwdvevtav gnqfnggcll vamvpelcsi qkrelyqltl fphqfinprt
                                                                      
TARGET           ssssssss         sss ssssss       hhh       sssss    
1fod2            ssssssss         sss ssssss       hhh       sssss    


TARGET    439   NMTAHITVPF VGVNRYDQYK VHKPWTLVVM VVAPLTVNTE GAPQIKVYAN
1fod2     153   nmtahitvpf vgvnrydqyk vhkpwtlvvm vvapltvnte gapqikvyan
                                                                      
TARGET           sssssss                 sssssss ss             ssssss
1fod2            sssssss                 sssssss ss             ssssss


TARGET    489   IAPTNVHVAG EFPSKE                                     
1fod2     203   iaptnvhvag efpske-                                    
                                                                      
TARGET          ssss sssss ss                                         
1fod2           ssss sssss ss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 3b04a9e9bd02f67db03f47385886478a on BC2-cluster at Sun Aug 31 02:50:16 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  7 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>3b04a9e9bd02f67db03f47385886478a
*********************************************************************************
>1u09A Evalue:0 SeqID:99.149 Method:BLAST Type:MODEL
----------------------------------------------------------------*****************
>1qqp3 Evalue:2.46937e-128 SeqID:98.636 Method:BLAST Type:MODEL
-----------------********--------------------------------------------------------
>1fod2 Evalue:2.53343e-126 SeqID:99.533 Method:BLAST Type:MODEL
----------*******----------------------------------------------------------------
>1fod1 Evalue:4.04937e-120 SeqID:98.571 Method:BLAST Type:MODEL
-------------------------*******-------------------------------------------------
>2j92A Evalue:1.62057e-113 SeqID:94.527 Method:BLAST Type:MODEL
---------------------------------------------------------*******-----------------
>1qolC Evalue:1.26464e-105 SeqID:98.844 Method:BLAST Type:MODEL
-******--------------------------------------------------------------------------
>1zba4 Evalue:5.35722e-18 SeqID:66.197 Method:BLAST Type:MODEL
-------*-*-----------------------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1u09A          1863           2332           BLAST          BUILT          
1qqp3          505            724            BLAST          BUILT          
1fod2          291            504            BLAST          BUILT          
1fod1          725            934            BLAST          BUILT          
2j92A          1656           1856           BLAST          BUILT          
1qolC          29             201            BLAST          BUILT          
1zba4          216            286            BLAST          BUILT          

FINISHED PIPELINE ON ID: 3b04a9e9bd02f67db03f47385886478a on gopt-53.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 03:08:15 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.