SWISS-MODEL Repository - Model Details

Model Overview
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1
206

Sequence
UniProt P03404
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
F-protein

Model 3D Structure
Model information:
Modelled residue range: 2 to 57
Based on template: [ 1qa4 ]  
Sequence Identity [%]: 98%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    2       GGKWSKSS VIGWPAVRER MRRAEPAADG VGAASRDLEK HGAITSSNTA
1qa4A     2       ggkwskss vvgwpavrer mrraepaadg vgaasrdlek hgaitssnta
                                                                      
TARGET                                                 hhhh hh        
1qa4A                                                  hhhh hh        


TARGET    50    ANNAACAW                                              
1qa4A     50    annaacaw-                                             
                                                                      
TARGET                                                                
1qa4A

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 99ce81ed848e425e73b5e89378613cc6 on BC2-cluster at Sun Aug 31 06:36:58 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  2 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>99ce81ed848e425e73b5e89378613cc6
*********************************************************************
>2nefA Evalue:2.27873e-71 SeqID:87.333 Method:BLAST Type:MODEL
------------------***********************************-----***********
>1qa4A Evalue:1.89408e-18 SeqID:98.214 Method:BLAST Type:MODEL
*******************--------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2nefA          56             205            BLAST          BUILT          
1qa4A          2              57             BLAST          BUILT          

FINISHED PIPELINE ON ID: 99ce81ed848e425e73b5e89378613cc6 on gopt-67.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 06:37:06 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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