SWISS-MODEL Repository - Model Details

Model Overview
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1
759

Sequence
UniProt P03428
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Flu_PB2

Model 3D Structure
Model information:
Modelled residue range: 685 to 759
Based on template: [ 2gmo ]  
Sequence Identity [%]: 98%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    685     GVESAVLR GFLILGKEDK RYGPALSINE LSNLAKGEKA NVLIGQGDVV
2gmoA     685     gvesavlr gflilgkedr rygpalsine lsnlakgeka nvligqgdvv
                                                                      
TARGET             hhhhhh                    hhh hh     sss ssss   sss
2gmoA              hhhhhh                    hhh hh       s ssss   sss


TARGET    733   LVMKRKRDSS ILTDSQTATK RIRMAIN                         
2gmoA     733   lvmkrkrdss iltdsqtatk rirmain-                        
                                                                      
TARGET          ssss                                                  
2gmoA           ss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: e3eb8c74a3f8957dac7090fa576d1e86 on BC2-cluster at Sun Aug 31 08:19:29 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  2 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>e3eb8c74a3f8957dac7090fa576d1e86
*************************************************************************************
>2vqzD Evalue:3.36587e-85 SeqID:93.333 Method:BLAST Type:MODEL
-----------------------------------*******************-------------------------------
>2gmoA Evalue:2.38686e-33 SeqID:98.667 Method:BLAST Type:MODEL
----------------------------------------------------------------------------*********


TEMPLATE ID    START          STOP           METHOD         STATUS         
2vqzD          319            483            BLAST          BUILT          
2gmoA          685            759            BLAST          BUILT          

FINISHED PIPELINE ON ID: e3eb8c74a3f8957dac7090fa576d1e86 on gopt-69.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 08:24:46 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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