SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures

Sequence
UniProt P04051
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
P04051: 4932.YOR116C

Domain
Link to: [ InterPro ]
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4

Model 3D Structure
Model information:
Modelled residue range: 1086 to 1134
Based on template: [ 2o5j ]  
Sequence Identity [%]: 52%
Model date: 2013-05-05
Revision date: 2013-04-01

Quaternary structure information: [details]
Template (2o5jD): Unknown
Model: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: DC: 2.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment 

                                                       
2o5jD     2     kkevrkvria laspekirsw sygevekpet inyrtlkper dglfderifg
                                                                      
                                                       
2o5jD                         hhhhhhh                                 


                                                       
2o5jD     52    pikdyecacg kykrqrfegk vcercgvevt ksivrryrmg hielatpaah
                                                                      
                                                       
2o5jD                                              hhhhh     sss      


                                                       
2o5jD     102   iwfvkdvpsk igtlldlsat eleqvlyfsk yivldpkgai lngvpvekrq
                                                                      
                                                       
2o5jD           hhhh     h hhhh        hhhhhh                         


                                                       
2o5jD     152   lltdeeyrel rygkqetypl ppgvdalvkd geevvkgqel apgvvsrldg
                                                                      
                                                       
2o5jD              hhhhhhh h    sssss             sss   sss    sss   s


                                                       
2o5jD     202   valyrfasil vvkarvypfe ddvevstgdr vapgdvladg gkvksdvygr
                                                                      
                                                       
2o5jD           sssss ssss ss          sss    ss s   sssss    sss   ss


                                                       
2o5jD     435   vevdlvrnvv rvvesydida rmgaeaiqql lkeldleale kelleemkhp
                                                                      
                                                       
2o5jD           ssss    ss sss            hhhhhh hh   hhhhh hhhhhhhh  


                                                       
2o5jD     485   srarrakark rlevvrafld sgnrpewmil eavpvlppdl rpmvqvdggr
                                                                      
                                                       
2o5jD             hhhhhhhh hhhhhhhhhh h    hh    sss         sssss   s


                                                       
2o5jD     535   fatsdlndly rrlinrnnrl kkllaqgape iiirnekrml qeavdalldn
                                                                      
                                                       
2o5jD           ssss hhhhh hhhhhhhhhh hhhhh      hhhhhhhhhh hhhhhhhh  


                                                       
2o5jD     585   grrgapvtnp gsdrplrslt dilsgkqgrf rqnllgkrvd ysgrsvivvg
                                                                      
                                                       
2o5jD                              hh hhh     hh hhhh            sssss


                                                       
2o5jD     635   pqlklhqcgl pkrmalelfk pfllkkmeek giapnvkaar rmlerqrdik
                                                                      
                                                       
2o5jD                sssss  hhhhhh    hhhhhhhh        hhhhh h         


                                                       
2o5jD     685   devwdaleev ihgkvvllnr aptlhrlgiq afqpvlvegq siqlhplvce
                                                                      
                                                       
2o5jD            hhhhhhhhh h    ssss           s sssssss     sss  h   


                                                       
2o5jD     735   afnadfdgdq mavhvplssf aqaeariqml sahnllspas geplakpsrd
                                                                      
                                                       
2o5jD           h           sss    hh hhhhhhh                       hh


                                                       
2o5jD     785   iilglyyitq vrkekkgagl efatpeeala ahergevaln apikvagret
                                                                      
                                                       
2o5jD           hhhhhhhhh                   hhhh    hhhh              


                                                       
2o5jD     835   svgrlkyvfa npdeallava hgivdlqdvv tvrymgkrle tspgrilfar
                                                                      
                                                       
2o5jD             hhh        hhhhhhhh          s ssss  ssss s hhhhhhhh


                                                       
2o5jD     885   ivaeavedek vaweliqldv pqeknslkdl vyqaflrlgm ektarlldal
                                                                      
                                                       
2o5jD           hhhhh   hh hhhh          hhhhhhh hhhhhhh    hhhhhhhhhh


                                                       
2o5jD     935   kyygftfstt sgitigidda vipeekkqyl eeadrkllqi eqayemgflt
                                                                      
                                                       
2o5jD           hhhhhhhhhh                hhhhhh hhhhhhhhhh hhhhh     


                                                       
2o5jD     985   drerydqilq lwtettekvt qavfknfeen ypfnplyvma qsgargnpqq
                                                                      
                                                       
2o5jD           hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh     hhhhhh h      hhh


                                                       
2o5jD     1035  irqlcglrgl mqkpsgetfe vpvrssfreg ltvleyfiss hgarkggadt
                                                                      
                                                       
2o5jD           hhhhh                              hhhhhhhh hhhhhhhhhh


                                                       
2o5jD     1085  alrtadsgyl trklvdvthe ivvreadcgt tnyisvplfq pdevtrslrl
                                                                      
                                                       
2o5jD           hhhh   hhh hhhhhh                   sss sss         ss


                                                       
2o5jD     1135  rkradieagl ygrvlareve vlgvrleegr ylsmddvhll ikaaeageiq
                                                                      
                                                       
2o5jD           s hhhhhhhh    sss                   hhhhhhh hhhhhh    


TARGET    1                                           GTAIG AIGAQSIGEP
2o5jD     1185  evpvrspltc qtrygvcqkc ygydlsmarp vsi--geavg ivaaqsigep
                                                                      
TARGET                                                   hh hhhhhhhhhh
2o5jD            ssss             hhh                     h hhhhhhhhhh


TARGET    16    GTQMTLKTFH FAGVA-SMNV TLGVPRIKEI INASK ---- ----------
2o5jD     1233  gtqltmrtfh tggvagaadi tqglprviel fearrpkaka idphqlleak
                                                                      
TARGET             hhhhhh          hh hhhhhhhhhh h                    
2o5jD              hhhhhh       hhhhh hhhhhhhhhh h            hhhhhhh 


TARGET          ---------- ---------- ---------- ---------- ----------
2o5jD     1340  gpeaverylv eeiqkvyraq gvklhdkhie ivvrqmmkyv evtdpgdsrl
                                                                      
TARGET                                                                
2o5jD             hhhhhhhh hhhhhhhhh        hhhh hhhhh  sss sss       


TARGET          ---------- ---------- ---------- ---------- ----------
2o5jD     1390  legqvlekwd vealnerlia egktpvawkp llmgvtksal stkswlsaas
                                                                      
TARGET                                                                
2o5jD            ssssshhhh hhhhhhhh         ssss s   hhhhhh      hhhh 


TARGET          ---------- ---------- ---------- ---------- ----------
2o5jD     1440  fqntthvlte aaiagkkdel iglkenvilg rlipagtgsd fvrftqvvdq
                                                                      
TARGET                                                                
2o5jD              hhhhhhh hhh           hhhhh                       h


TARGET          ---------- ------                                     
2o5jD     1490  ktlkaieear keavea                                     
                                                                      
TARGET                                                                
2o5jD           hhhhhhhhhh hh

Quality 


Template's ligands section 
Ligands in the template: DC: 2. 
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page. 
No ligands were included in the model.

 
Oligomer Annotation of the Template structure 
 Sorry, we haven't found any oligomeric annotation for this template. 
 Either the complex was too large (>60 chains) or the structures was excluded for other reasons. 
 Please contact help@swissmodel.org for more information!

Template Selection 
 - Start SMR-Pipeline for:085fbf46e3adabc4027d10d249abb705 on BC2-cluster at Sun May  5 01:18:06
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
FATAL - No md5 found in hash for: 4jk1D
FATAL - No md5 found in hash for: 4jk1I
FATAL - No md5 found in hash for: 4jk2I
FATAL - No md5 found in hash for: 4jk2D
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - Skipping oligomeric state prediction due to too many templates for cluster: 10_1438
 - Warning: Oligomer Prediction was not successfull!

 - Warning: clustersMergedFile not found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:5): model based on new templates
 - Send 5 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                                             ***
 - building model based on 2o5jD (1086-1134) was successful 
 -             ***************************************
 - building model based on 2pmzQ (222-940) was successful 
 -                                                                       ********
 - building model based on 2pmzG (1280-1426) was successful 
 -  ***************************************************
 - building model based on 4aybA (11-940) was successful 
 - *******************************************************************************
 - building model based on 3gtjA (7-1442) was not successful go to next best template
 - *******************************************************************************
 - building model based on 3po3A (7-1442) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:085fbf46e3adabc4027d10d249abb705 on BC2-cluster at Sun May  5 02:00:39
2013


Template Description
Match Chain SeqId

2nvt: RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH GMPCPP
Solved by: X-RAY, Resolution: 3.36A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1436 2nvtA 31%
[Model]

1r9s: RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE
Solved by: X-RAY, Resolution: 4.25A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1432 1r9sA 31%
[Model]

3s16: RNA POLYMERASE II INITIATION COMPLEX WITH AN 8-NT RNA
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-1432 3s16A 31%
[Model]

3qt1: RNA POLYMERASE II VARIANT CONTAINING A CHIMERIC RPB9-C11 S
Solved by: X-RAY, Resolution: 4.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1437 3qt1A 31%
[Model]

3gtj: BACKTRACKED RNA POLYMERASE II COMPLEX WITH 13MER RNA
Solved by: X-RAY, Resolution: 3.42A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

5-1436 3gtjA 31%
[Model]

4a3b: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 4NT DNA-RNA HYBRID
Solved by: X-RAY, Resolution: 3.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1436 4a3bA 31%
[Model]

2nvx: RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH 2'-DUTP
Solved by: X-RAY, Resolution: 3.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-1432 2nvxA 31%
[Model]

3s2h: RNA POLYMERASE II INITIATION COMPLEX WITH A 6-NT RNA CONTA2[PRIME]-IODO ATP
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-1432 3s2hA 31%
[Model]

3s14: RNA POLYMERASE II INITIATION COMPLEX WITH A 6-NT RNA
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-1432 3s14A 31%
[Model]

4a3g: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 2NT DNA-RNA HYBRID
Solved by: X-RAY, Resolution: 3.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1436 4a3gA 31%
[Model]

2ja5: CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-1436 2ja5A 31%
[Model]

3hoy: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX VI
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1437 3hoyA 31%
[Model]

3hov: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX II
Solved by: X-RAY, Resolution: 4.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1437 3hovA 31%
[Model]

3rzd: RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-1432 3rzdA 31%
[Model]

3rzo: RNA POLYMERASE II INITIATION COMPLEX WITH A 4-NT RNA
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-1432 3rzoA 31%
[Model]

4a3k: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 7NT DNA-RNA HYBRID
Solved by: X-RAY, Resolution: 3.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1436 4a3kA 31%
[Model]

1nik: WILD TYPE RNA POLYMERASE II
Solved by: X-RAY, Resolution: 4.25A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1432 1nikA 31%
[Model]

4a93: RNA POLYMERASE II ELONGATION COMPLEX CONTAINING A CPD LESION
Solved by: X-RAY, Resolution: 3.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1436 4a93A 31%
[Model]

2r92: ELONGATION COMPLEX OF RNA POLYMERASE II WITH ARTIFICIAL RDRP SCAFFOLD
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-1436 2r92A 31%
[Model]

1y1w: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 4.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 1y1wA 31%
[Model]

3k7a: CRYSTAL STRUCTURE OF AN RNA POLYMERASE II-TFIIB COMPLEX
Solved by: X-RAY, Resolution: 3.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1432 3k7aA 31%
[Model]

2ja7: CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-1436 2ja7M 31%
[Model]
1-1436 2ja7A 31%
[Model]

3hoz: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX IV WITH A T-MISMATCH AND A FRAYED RNA 3'-GUANINE
Solved by: X-RAY, Resolution: 3.65A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-1436 3hozA 31%
[Model]

2vum: ALPHA-AMANITIN INHIBITED COMPLETE RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 3.4A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 2vumA 31%
[Model]

4a3i: RNA POLYMERASE II BINARY COMPLEX WITH DNA
Solved by: X-RAY, Resolution: 3.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1436 4a3iA 31%
[Model]

3gtk: BACKTRACKED RNA POLYMERASE II COMPLEX WITH 18MER RNA
Solved by: X-RAY, Resolution: 3.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

5-1436 3gtkA 31%
[Model]

3s1m: RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA (VARI
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-1432 3s1mA 31%
[Model]

3hox: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX V
Solved by: X-RAY, Resolution: 3.65A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 3hoxA 31%
[Model]

1i6h: RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 4.25A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1432 1i6hA 31%
[Model]

3s1n: RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA (VARI
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-1432 3s1nA 31%
[Model]

2ja6: CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-1436 2ja6A 31%
[Model]

4a3d: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 6NT HYBRID
Solved by: X-RAY, Resolution: 3.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1436 4a3dA 31%
[Model]

3gtm: CO-COMPLEX OF BACKTRACKED RNA POLYMERASE II WITH TFIIS
Solved by: X-RAY, Resolution: 36.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 3gtmA 31%
[Model]

2nvy: RNA POLYMERASE II FORM II IN 150 MM MN+2
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-1436 2nvyA 31%
[Model]

3k1f: CRYSTAL STRUCTURE OF RNA POLYMERASE II IN COMPLEX WITH TFI
Solved by: X-RAY, Resolution: 4.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1437 3k1fA 31%
[Model]

2b63: COMPLETE RNA POLYMERASE II-RNA INHIBITOR COMPLEX
Solved by: X-RAY, Resolution: 4.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 2b63A 31%
[Model]

2ja8: CPD LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-1436 2ja8A 31%
[Model]

1wcm: COMPLETE 12-SUBUNIT RNA POLYMERASE II AT 3.8 ANG
Solved by: X-RAY, Resolution: 4.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 1wcmA 31%
[Model]

1y1v: REFINED RNA POLYMERASE II-TFIIS COMPLEX
Solved by: X-RAY, Resolution: 36.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 1y1vA 31%
[Model]

3po3: ARRESTED RNA POLYMERASE II REACTIVATION INTERMEDIATE
Solved by: X-RAY, Resolution: 36.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 3po3A 31%
[Model]

2nvz: RNA POLYMERASE II ELONGATION COMPLEX WITH UTP, UPDATED 11/2006
Solved by: X-RAY, Resolution: 4.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-1432 2nvzA 31%
[Model]

3j1n: CRYO-EM MAP OF A YEAST MINIMAL PREINITIATION COMPLEX INTERTHE MEDIATOR HEAD MODULE
Solved by: X-RAY, Resolution: 16.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-1436 3j1nA 31%
[Model]

4bbs: STRUCTURE OF AN INITIALLY TRANSCRIBING RNA POLYMERASE II- TFIIB COMPLEX
Solved by: X-RAY, Resolution: 3.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1436 4bbsA 31%
[Model]

3hou: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX I WITH A T-UMISMATCH
Solved by: X-RAY, Resolution: 4.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1437 3houM 31%
[Model]
2-1437 3houA 31%
[Model]

3gtg: BACKTRACKED RNA POLYMERASE II COMPLEX WITH 12MER RNA
Solved by: X-RAY, Resolution: 3.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

5-1436 3gtgA 31%
[Model]

3s17: RNA POLYMERASE II INITIATION COMPLEX WITH A 9-NT RNA
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-1432 3s17A 31%
[Model]

3s2d: RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT RNA CONTAU
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-1432 3s2dA 31%
[Model]

1r5u: RNA POLYMERASE II TFIIB COMPLEX
Solved by: X-RAY, Resolution: 4.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-1432 1r5uA 31%
[Model]

2e2h: RNA POLYMERASE II ELONGATION COMPLEX AT 5 MM MG2+ WITH GTP
Solved by: X-RAY, Resolution: 4.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-1432 2e2hA 31%
[Model]

3how: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX III WITH A TMISMATCH AND A FRAYED RNA 3'-URIDINE
Solved by: X-RAY, Resolution: 4.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1437 3howA 31%
[Model]

1i3q: RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1432 1i3qA 31%
[Model]

2e2i: RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH 2'-DGTP
Solved by: X-RAY, Resolution: 3.41A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-1435 2e2iA 31%
[Model]

2yu9: RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH U
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1436 2yu9A 31%
[Model]

1y77: COMPLETE RNA POLYMERASE II ELONGATION COMPLEX WITH SUBSTRATE ANALOGUE GMPCPP
Solved by: X-RAY, Resolution: 4.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 1y77A 31%
[Model]

3h3v: YEAST RNAP II CONTAINING POLY(A)-SIGNAL SEQUENCE IN THE ACTIVE SITE
Solved by: X-RAY, Resolution: 4.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 3h3vB 31%
[Model]

2b8k: 12-SUBUNIT RNA POLYMERASE II
Solved by: X-RAY, Resolution: 4.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 2b8kA 31%
[Model]

4a3c: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 5NT HYBRID
Solved by: X-RAY, Resolution: 3.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1436 4a3cA 31%
[Model]

2nvq: RNA POLYMERASE II ELONGATION COMPLEX IN 150 MM MG+2 WITH 2'DUTP
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-1432 2nvqA 31%
[Model]

2r93: ELONGATION COMPLEX OF RNA POLYMERASE II WITH A HEPATITIS DELTA VIRUS-DERIVED RNA STEM LOOP
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-1436 2r93A 31%
[Model]

3s15: RNA POLYMERASE II INITIATION COMPLEX WITH A 7-NT RNA
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-1432 3s15A 31%
[Model]

3s1r: RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT 3'-DEOXY WITH GTP
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-1432 3s1rA 31%
[Model]

4bbr: STRUCTURE OF RNA POLYMERASE II-TFIIB COMPLEX
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-1436 4bbrA 31%
[Model]

3j0k: ORIENTATION OF RNA POLYMERASE II WITHIN THE HUMAN ACTIVATOMEDIATOR-POL II-TFIIF ASSEMBLY
Solved by: X-RAY, Resolution: 36.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 3j0kA 31%
[Model]

3po2: ARRESTED RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

5-1436 3po2A 31%
[Model]

3h0g: RNA POLYMERASE II FROM SCHIZOSACCHAROMYCES POMBE
Solved by: X-RAY, Resolution: 3.65A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-1439 3h0gA 32%
[Model]
7-1445 3h0gM 31%
[Model]

1twf: RNA POLYMERASE II COMPLEXED WITH UTP AT 2.3 A RESOLUTION
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-1436 1twfA 31%
[Model]

1i50: RNA POLYMERASE II CRYSTAL FORM II AT 2.8 A RESOLUTION
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-1436 1i50A 31%
[Model]

2r7z: CISPLATIN LESION CONTAINING RNA POLYMERASE II ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 4.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 2r7zA 31%
[Model]

4a3e: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 5NT HYBRID AND SOAKED WITH AMPCPP
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

5-1436 4a3eA 31%
[Model]

3s1q: RNA POLYMERASE II INITIATION COMPLEX WITH A 5-NT 3'-DEOXY WITH ATP
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-1432 3s1qA 31%
[Model]

3gtq: BACKTRACKED RNA POLYMERASE II COMPLEX INDUCED BY DAMAGE
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1432 3gtqA 30%
[Model]

4a3l: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 7NT DNA-RNA HYBRID AND SOAKED WITH AMPCPP
Solved by: X-RAY, Resolution: 3.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1436 4a3lA 30%
[Model]

1sfo: RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1432 1sfoA 30%
[Model]

4a3f: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 6NT HYBRID AND SOAKED WITH AMPCPP
Solved by: X-RAY, Resolution: 3.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1436 4a3fA 30%
[Model]

4a3j: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 2NT DNA-RNA HYBRID AND SOAKED WITH GMPCPP
Solved by: X-RAY, Resolution: 3.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1436 4a3jA 30%
[Model]

2e2j: RNA POLYMERASE II ELONGATION COMPLEX IN 5 MM MG+2 WITH GMPCPP
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1432 2e2jA 30%
[Model]

4b1p: ARCHAEAL RNAP-DNA BINARY COMPLEX AT 4.32ANG
Solved by: X-RAY, Resolution: 4.32A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-941 4b1pW 37%
[Model]
1059-1435 4b1pY 30%
[Model]

3i4n: 8-OXOGUANINE CONTAINING RNA POLYMERASE II ELONGATION COMPLE
Solved by: X-RAY, Resolution: 3.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 3i4nA 30%
[Model]

1r9t: RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1432 1r9tA 30%
[Model]

4b1o: ARCHAEAL RNAP-DNA BINARY COMPLEX AT 4.32ANG
Solved by: X-RAY, Resolution: 4.32A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-941 4b1oA 37%
[Model]
1059-1435 4b1oC 30%
[Model]

3gto: BACKTRACKED RNA POLYMERASE II COMPLEX WITH 15MER RNA
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1432 3gtoA 30%
[Model]

3m4o: RNA POLYMERASE II ELONGATION COMPLEX B
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1432 3m4oA 30%
[Model]

3fki: 12-SUBUNIT RNA POLYMERASE II REFINED WITH ZN-SAD DATA
Solved by: X-RAY, Resolution: 3.88A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 3fkiA 30%
[Model]

4ayb: RNAP AT 3.2ANG
Solved by: X-RAY, Resolution: 4.32A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-941 4aybA 37%
[Model]
1059-1435 4aybC 30%
[Model]

1k83: CRYSTAL STRUCTURE OF YEAST RNA POLYMERASE II COMPLEXED WITTHE INHIBITOR ALPHA AMANITIN
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-1436 1k83A 30%
[Model]

4a3m: RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 4NT DNA-RNA HYBRID AND SOAKED WITH AMPCPP
Solved by: X-RAY, Resolution: 3.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1436 4a3mA 30%
[Model]

3i4m: 8-OXOGUANINE CONTAINING RNA POLYMERASE II ELONGATION COMPLD
Solved by: X-RAY, Resolution: 3.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-1436 3i4mA 30%
[Model]

3gtl: BACKTRACKED RNA POLYMERASE II COMPLEX WITH 13MER WITH G<>UMISMATCH
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1432 3gtlA 30%
[Model]

3m3y: RNA POLYMERASE II ELONGATION COMPLEX C
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1432 3m3yA 30%
[Model]

3gtp: BACKTRACKED RNA POLYMERASE II COMPLEX WITH 24MER RNA
Solved by: X-RAY, Resolution: 4.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-1432 3gtpA 30%
[Model]

2waq: THE COMPLETE STRUCTURE OF THE ARCHAEAL 13-SUBUNIT DNA- DIRECTED RNA POLYMERASE
Solved by: X-RAY, Resolution: 3.52A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-942 2waqA 37%
[Model]
1059-1434 2waqC 29%
[Model]

1twc: RNA POLYMERASE II COMPLEXED WITH GTP
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-1436 1twcA 29%
[Model]

1twa: RNA POLYMERASE II COMPLEXED WITH ATP
Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

5-1436 1twaA 29%
[Model]

3cqz: CRYSTAL STRUCTURE OF 10 SUBUNIT RNA POLYMERASE II IN COMPLEX WITH THE INHIBITOR ALPHA-AMANITIN
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-1436 3cqzA 29%
[Model]

3hkz: THE X-RAY CRYSTAL STRUCTURE OF RNA POLYMERASE FROM ARCHAEA
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-943 3hkzI 36%
[Model]
11-943 3hkzA 36%
[Model]
1054-1435 3hkzC 29%
[Model]
1054-1435 3hkzM 29%
[Model]

2wb1: THE COMPLETE STRUCTURE OF THE ARCHAEAL 13-SUBUNIT DNA- DIRECTED RNA POLYMERASE
Solved by: X-RAY, Resolution: 3.52A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-942 2wb1W 37%
[Model]
11-942 2wb1A 37%
[Model]
1059-1434 2wb1Y 29%
[Model]
1059-1434 2wb1C 29%
[Model]

1twh: RNA POLYMERASE II COMPLEXED WITH 2'DATP
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

5-1436 1twhA 29%
[Model]

1twg: RNA POLYMERASE II COMPLEXED WITH CTP
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

5-1436 1twgA 29%
[Model]

2y0s: CRYSTAL STRUCTURE OF SULFOLOBUS SHIBATAE RNA POLYMERASE INP21 SPACE GROUP
Solved by: X-RAY, Resolution: 3.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-941 2y0sW 36%
[Model]
11-941 2y0sA 36%
[Model]
1057-1436 2y0sY 28%
[Model]
1057-1436 2y0sC 28%
[Model]

3qqc: CRYSTAL STRUCTURE OF ARCHAEAL SPT4/5 BOUND TO THE RNAP CLA
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

7-366 3qqcA 26%
[Model]

2pmz: ARCHAEAL RNA POLYMERASE FROM SULFOLOBUS SOLFATARICUS
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-943 2pmzQ 35%
[Model]
11-943 2pmzA 35%
[Model]
1056-1434 2pmzG 25%
[Model]
1056-1434 2pmzC 25%
[Model]

1ynj: TAQ RNA POLYMERASE-SORANGICIN COMPLEX
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

247-1108 1ynjD 19%
[Model]
1315-1436 1ynjJ 23%
[Model]

1ynn: TAQ RNA POLYMERASE-RIFAMPICIN COMPLEX
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

247-1108 1ynnD 19%
[Model]
1315-1436 1ynnJ 23%
[Model]

2gho: RECOMBINANT THERMUS AQUATICUS RNA POLYMERASE FOR STRUCTURASTUDIES
Solved by: X-RAY, Resolution: 5.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-1429 2ghoD 18%
[Model]
1318-1368 2ghoD 22%
[Model]

3aoi: RNA POLYMERASE-GFH1 COMPLEX (CRYSTAL TYPE 2)
Solved by: X-RAY, Resolution: 4.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-1440 3aoiI 17%
[Model]
11-1439 3aoiD 16%
[Model]
11-1439 3aoiN 17%
[Model]
1317-1369 3aoiI 21%
[Model]

2a6e: CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

248-1438 2a6eN 19%
[Model]
248-1438 2a6eD 19%
[Model]

2a69: CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC RIFAPENTIN
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

248-1438 2a69D 19%
[Model]
248-1438 2a69N 19%
[Model]

1iw7: CRYSTAL STRUCTURE OF THE RNA POLYMERASE HOLOENZYME FROM THERMUS THERMOPHILUS AT 2.6A RESOLUTION
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

248-1438 1iw7D 19%
[Model]
248-1438 1iw7N 19%
[Model]

2a68: CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC RIFABUTIN
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

248-1438 2a68D 19%
[Model]
248-1438 2a68N 19%
[Model]

3dxj: CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH THE ANTIBIOTIC MYXOPYRONIN
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

247-1441 3dxjD 19%
[Model]
247-1441 3dxjN 19%
[Model]

1smy: STRUCTURAL BASIS FOR TRANSCRIPTION REGULATION BY ALARMONE PPGPP
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

248-1438 1smyN 19%
[Model]
248-1438 1smyD 19%
[Model]

2cw0: CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS RNA POLYMERASE HOLOENZYME AT 3.3 ANGSTROMS RESOLUTION
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

248-1438 2cw0D 19%
[Model]
248-1438 2cw0N 19%
[Model]

1zyr: STRUCTURE OF THERMUS THERMOPHILUS RNA POLYMERASE HOLOENZYMIN COMPLEX WITH THE ANTIBIOTIC STREPTOLYDIGIN
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

248-1438 1zyrD 19%
[Model]
248-1438 1zyrN 19%
[Model]

2be5: CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH INHIBITOR TAGETITOXIN
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

248-1438 2be5D 19%
[Model]
248-1438 2be5N 19%
[Model]

3iyd: THREE-DIMENSIONAL EM STRUCTURE OF AN INTACT ACTIVATOR- DEPENDENT TRANSCRIPTION INITIATION COMPLEX
Solved by: X-RAY, Resolution: 19.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-1433 3iydD 18%
[Model]

4g7o: CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TRANSCRIPTION INCOMPLEX CONTAINING 2 NT OF RNA
Solved by: X-RAY, Resolution: 3.81A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

248-1438 4g7oN 18%
[Model]
248-1438 4g7oD 18%
[Model]

3aoh: RNA POLYMERASE-GFH1 COMPLEX (CRYSTAL TYPE 1)
Solved by: X-RAY, Resolution: 4.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-1438 3aohI 18%
[Model]
11-1439 3aohN 16%
[Model]
11-1440 3aohD 16%
[Model]
1317-1366 3aohI 18%
[Model]

4g7z: CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TRANSCRIPTION INCOMPLEX CONTAINING 5-BRU AT TEMPLATE-STRAND POSITION +1
Solved by: X-RAY, Resolution: 3.81A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

248-1438 4g7zN 18%
[Model]
248-1438 4g7zD 18%
[Model]

2a6h: CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC STERPTOLYDIGIN
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

248-1438 2a6hD 18%
[Model]
248-1438 2a6hN 18%
[Model]

4g7h: CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TRANSCRIPTION INCOMPLEX
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

247-1440 4g7hN 18%
[Model]
247-1440 4g7hD 18%
[Model]

2ppb: CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNAP POLYMERASE ELONGATION COMPLEX WITH THE NTP SUBSTRATE ANALOG AND ANTIBIOTIC STREPTOLYDIGIN
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-1436 2ppbN 18%
[Model]
11-1436 2ppbD 18%
[Model]

4gzz: CRYSTAL STRUCTURES OF BACTERIAL RNA POLYMERASE PAUSED ELONCOMPLEXES
Solved by: X-RAY, Resolution: 4.29A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-1438 4gzzD 17%
[Model]

4gzy: CRYSTAL STRUCTURES OF BACTERIAL RNA POLYMERASE PAUSED ELONCOMPLEXES
Solved by: X-RAY, Resolution: 4.29A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-1438 4gzyD 17%
[Model]

3eql: CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC MYXOPYRONIN
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-1438 3eqlD 17%
[Model]
11-1438 3eqlN 17%
[Model]

4igc: X-RAY CRYSTAL STRUCTURE OF ESCHERICHIA COLI SIGMA70 HOLOEN
Solved by: X-RAY, Resolution: 3.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

5-1431 4igcI 17%
[Model]
5-1431 4igcD 17%
[Model]
1317-1370 4igcI 17%
[Model]
1317-1370 4igcD 17%
[Model]

2o5i: CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE ELONGATION COMPLEX
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-1440 2o5iD 17%
[Model]
11-1440 2o5iN 17%
[Model]

3lu0: MOLECULAR MODEL OF ESCHERICHIA COLI CORE RNA POLYMERASE
Solved by: X-RAY, Resolution: 11.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-1436 3lu0D 17%
[Model]

2o5j: CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNAP POLYMERASE ELONGATION COMPLEX WITH THE NTP SUBSTRATE ANALOG
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

11-1437 2o5jD 16%
[Model]
11-1437 2o5jN 16%
[Model]

2auj: STRUCTURE OF THERMUS AQUATICUS RNA POLYMERASE BETA'-SUBUNIINSERT
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1084-1141 2aujD 7%
[Model]

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Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.