SWISS-MODEL Repository - Model Details

Model Overview
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1
192

Sequence
UniProt P04388
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
P04388: 7227.FBpp0073068

Domain
Link to: [ InterPro ]
Ras

Model 3D Structure
Model information:
Modelled residue range: 4 to 170
Based on template: [ 2ery ]  
Sequence Identity [%]: 76%
Model date: 2013-02-22
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (2ery): MONOMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: GDP: 1, MG: 1.
Ligands in the model: GDP: 1, MG: 1
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1       QTYKLVVV GGGGVGKSAI TIQFIQSYFV TDYDPTIEDS YTKQCNIDDV
2eryB     13      ekyrlvvv ggggvgksal tiqfiqsyfv tdydptieds ytkqcviddr
                                                                      
TARGET            ssssssss       hhhh hhhhh              ss sssssss  s
2eryB             ssssssss       hhhh hhhhh              ss sssssss  s


TARGET    49    PAKLDILDTA GQEEFSAMRE QYMRSGEGFL LVFALNDHSS FDEIPKFQRQ
2eryB     61    aarldildta gqeefgamre qymrtgegfl lvfsvtdrgs feeiykfqrq
                                                                      
TARGET          ssssssss               hhhh  sss sssss  hhh    hhhhhhh
2eryB           ssssssss               hhhh  sss sssss  hhh    hhhhhhh


TARGET    99    ILRVKDRDEF PMLMVGNKCD LKHQQQVSLE EAQNTSRNLM IPYIECSAKL
2eryB     111   ilrvkdrdef pmilignkad ldhqrqvtqe egqqlarqlk vtymeasaki
                                                                      
TARGET          hhhhh      ssssssss           hh hhhhhhhhh   sssss    
2eryB           hhhhh      ssssssss           hh hhhhhhhhh   sssss    


TARGET    149   RVNVDQAFHE LVRIVRKFQ  -                               
2eryB     161   rmnvdqafhe lvrvirkfqe q                               
                                                                      
TARGET             hhhhhhh hhhhhhhhh                                  
2eryB              hhhhhhh hhhhhhhhh

Quality 


Template's ligands section 
Ligands in the template: GDP: 1, MG: 1. 
Ligands in the template that will be assessed: GDP2, MG4. 
Model's ligands section 
GDP2 
GDP2 interacts, within a radius of 3 Angstroem, with the following ions: MG4. They will be considered as a single ligand. 
All the residues interacting with the ligand are completely conserved between model and template. 
The RMSD between the interacting residues of model and template is smaller than 2 Angstrom: 0.070 
Given the properties calculated previously, the ligand GDP2 will be included in the model. 
GDP2: conservation:True, RMSD:True, included: True 
 
The new model with the included ligands was saved successfully.

 
Quaternary Structure Annotation of the Template 
 2ery is annotated as MONOMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 2ery.pdb2.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 Analysis of evolutionary and family specific aspects revealed non-conservation of the oligomeric structure 
 Hence, the oligomeric structures of the target and the template cannot be assumed to be similar (=MONOMER) 
 The target structure was calculated as SINGLE CHAIN 
 The corresponding reliability score is 0.354 (>0.5 indicates similarity)

Template Selection 
 - Start SMR-Pipeline for:1842d4d440a1ee43fe0271e2c1ab1b14 on BC2-cluster at Fri Feb 22 05:33:41
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1 go for
modeling ...

FATAL - No A3m found

 - No template with H found
 - No template with L found
 - No template with G found
 - No template with S found
 - No template with S found
 - No template with S found
 - No template with C found
 - No template with A found
 - No template with D found
 - No template with C found
 - No template with B found
 - No template with S found
 - No template with S found
 - No template with S found
 - No template with S found
 - No template with B found
 - No template with S found
 - No template with H found
 - No template with L found
 - No template with C found
 - No template with B found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -   **********************************************************************
 - building model based on 2eryB (4-170) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:1842d4d440a1ee43fe0271e2c1ab1b14 on BC2-cluster at Fri Feb 22 05:35:10
2013


Template Description
Match Chain SeqId

2ery: THE CRYSTAL STRUCTURE OF THE RAS RELATED PROTEIN RRAS2 (RRAS2) IN THE GDP BOUND STATE
Solved by: X-RAY, Resolution: 1.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-170 2eryA 74%
[Model]
4-170 2eryB 77%
[Model]

2fn4: THE CRYSTAL STRUCTURE OF HUMAN RAS-RELATED PROTEIN, RRAS, IN THE GDP-BOUND STATE
Solved by: X-RAY, Resolution: 1.65A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

4-170 2fn4A 69%
[Model]

1he8: RAS G12V-PI 3-KINASE GAMMA COMPLEX
Solved by: X-RAY, Resolution: 3.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1he8B 61%
[Model]

4ept: DISCOVERY OF SMALL MOLECULES THAT BIND TO K-RAS AND INHIBIMEDIATED ACTIVATION
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 4eptA 61%
[Model]

1lf0: CRYSTAL STRUCTURE OF RASA59G IN THE GTP-BOUND FORM
Solved by: X-RAY, Resolution: 1.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1lf0A 61%
[Model]

1crr: THE SOLUTION STRUCTURE AND DYNAMICS OF RAS P21. GDP DETERMINED BY HETERONUCLEAR THREE AND FOUR DIMENSIONAL NMSPECTROSCOPY
Solved by: NMR, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1crrA 61%
[Model]

1crq: THE SOLUTION STRUCTURE AND DYNAMICS OF RAS P21. GDP DETERMINED BY HETERONUCLEAR THREE AND FOUR DIMENSIONAL NMSPECTROSCOPY
Solved by: NMR, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1crqA 61%
[Model]

1zvq: STRUCTURE OF THE Q61G MUTANT OF RAS IN THE GDP-BOUND FORM
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1zvqA 61%
[Model]

4efm: CRYSTAL STRUCTURE OF H-RAS G12V IN COMPLEX WITH GPPNHP (ST
Solved by: X-RAY, Resolution: 1.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 4efmA 61%
[Model]

121p: STRUKTUR UND GUANOSINTRIPHOSPHAT-HYDROLYSEMECHANISMUS DES TERMINAL VERKUERZTEN MENSCHLICHEN KREBSPROTEINS P21-H-RAS
Solved by: X-RAY, Resolution: 1.54A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 121pA 61%
[Model]

1nvw: STRUCTURAL EVIDENCE FOR FEEDBACK ACTIVATION BY RASGTP OF THE RAS-SPECIFIC NUCLEOTIDE EXCHANGE FACTOR SOS
Solved by: X-RAY, Resolution: 2.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1nvwQ 61%
[Model]
3-168 1nvwR 61%
[Model]

4efn: CRYSTAL STRUCTURE OF H-RAS Q61L IN COMPLEX WITH GPPNHP (ST
Solved by: X-RAY, Resolution: 2.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 4efnA 61%
[Model]

3l8z: H-RAS WILDTYPE NEW CRYSTAL FORM
Solved by: X-RAY, Resolution: 1.44A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3l8zA 61%
[Model]

2vh5: CRYSTAL STRUCTURE OF HRAS(G12V) - ANTI-RAS FV (DISULFIDE FREE MUTANT) COMPLEX
Solved by: X-RAY, Resolution: 2.7A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2vh5R 61%
[Model]

4dsn: SMALL-MOLECULE LIGANDS BIND TO A DISTINCT POCKET IN RAS ANSOS-MEDIATED NUCLEOTIDE EXCHANGE ACTIVITY
Solved by: X-RAY, Resolution: 2.03A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-170 4dsnA 61%
[Model]

2c5l: STRUCTURE OF PLC EPSILON RAS ASSOCIATION DOMAIN WITH HRAS
Solved by: X-RAY, Resolution: 1.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2c5lA 61%
[Model]
3-168 2c5lB 61%
[Model]

2uzi: CRYSTAL STRUCTURE OF HRAS(G12V)- ANTI-RAS FV COMPLEX
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2uziR 61%
[Model]

4efl: CRYSTAL STRUCTURE OF H-RAS WT IN COMPLEX WITH GPPNHP (STAT
Solved by: X-RAY, Resolution: 1.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 4eflA 61%
[Model]

4dly: SET 1 CACL2/DTT 'OFF'
Solved by: X-RAY, Resolution: 1.57A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 4dlyA 61%
[Model]

4dlv: H-RAS SET 2 CACL2/DTT 'OFF'
Solved by: X-RAY, Resolution: 1.57A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 4dlvA 61%
[Model]

3rs5: H-RAS SOAKED IN 55% DIMETHYLFORMAMIDE: 1 OF 10 IN MSCS SET
Solved by: X-RAY, Resolution: 1.68A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3rs5A 61%
[Model]

1k8r: CRYSTAL STRUCTURE OF RAS-BRY2RBD COMPLEX
Solved by: X-RAY, Resolution: 3.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1k8rA 61%
[Model]

1nvv: STRUCTURAL EVIDENCE FOR FEEDBACK ACTIVATION BY RASGTP OF THE RAS-SPECIFIC NUCLEOTIDE EXCHANGE FACTOR SOS
Solved by: X-RAY, Resolution: 2.18A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1nvvR 61%
[Model]
3-168 1nvvQ 61%
[Model]

3lbn: RAS SOAKED IN MAGNESIUM ACETATE
Solved by: X-RAY, Resolution: 1.86A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3lbnA 61%
[Model]

1nvu: STRUCTURAL EVIDENCE FOR FEEDBACK ACTIVATION BY RASGTP OF THE RAS-SPECIFIC NUCLEOTIDE EXCHANGE FACTOR SOS
Solved by: X-RAY, Resolution: 2.20A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1nvuQ 61%
[Model]
3-168 1nvuR 61%
[Model]

421p: THREE-DIMENSIONAL STRUCTURES OF H-RAS P21 MUTANTS: MOLECULAR BASIS FOR THEIR INABILITY TO FUNCTION AS SIGNALSWITCH MOLECULES
Solved by: X-RAY, Resolution: 2.20A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 421pA 61%
[Model]

2lcf: SOLUTION STRUCTURE OF GPPNHP-BOUND H-RAST35S MUTANT PROTEI
Solved by: NMR, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2lcfA 61%
[Model]

3v4f: H-RAS SET 1 PEG 400/CACL2
Solved by: X-RAY, Resolution: 1.39A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3v4fA 61%
[Model]

3tgp: ROOM TEMPERATURE H-RAS
Solved by: X-RAY, Resolution: 1.31A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3tgpA 61%
[Model]

1p2v: H-RAS 166 IN 60 % 1,6 HEXANEDIOL
Solved by: X-RAY, Resolution: 2.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1p2vA 61%
[Model]

3i3s: CRYSTAL STRUCTURE OF H-RAS WITH THR50 REPLACED BY ISOLEUCI
Solved by: X-RAY, Resolution: 1.36A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3i3sR 61%
[Model]

1agp: THREE-DIMENSIONAL STRUCTURES AND PROPERTIES OF A TRANSFORMING AND A NONTRANSFORMING GLY-12 MUTANT OF P21-HRAS
Solved by: X-RAY, Resolution: 2.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1agpA 61%
[Model]

1lf5: CRYSTAL STRUCTURE OF RASA59G IN THE GDP-BOUND FORM
Solved by: X-RAY, Resolution: 1.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1lf5A 61%
[Model]

3rs0: H-RAS SOAKED IN NEAT CYCLOPENTANOL: ONE OF 10 IN MSCS SET
Solved by: X-RAY, Resolution: 1.40A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3rs0A 61%
[Model]

3lbi: RAS SOAKED IN MAGNESIUM ACETATE AND BACK SOAKED IN CALCIUMACETATE
Solved by: X-RAY, Resolution: 2.09A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3lbiA 61%
[Model]

1jai: H-RAS P21 PROTEIN MUTANT G12P, COMPLEXED WITH GUANOSINE-5'[BETA,GAMMA-METHYLENE] TRIPHOSPHATE AND MANGANESE
Solved by: X-RAY, Resolution: 1.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1jaiA 61%
[Model]

1ctq: STRUCTURE OF P21RAS IN COMPLEX WITH GPPNHP AT 100 K
Solved by: X-RAY, Resolution: 1.26A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1ctqA 61%
[Model]

4dst: SMALL-MOLECULE LIGANDS BIND TO A DISTINCT POCKET IN RAS ANSOS-MEDIATED NUCLEOTIDE EXCHANGE ACTIVITY
Solved by: X-RAY, Resolution: 2.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-170 4dstA 61%
[Model]

3kud: COMPLEX OF RAS-GDP WITH RAFRBD(A85K)
Solved by: X-RAY, Resolution: 2.15A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3kudA 61%
[Model]

2quz: CRYSTAL STRUCTURE OF THE ACTIVATING H-RASK117R MUTANT IN COSTELLO SYNDROME, BOUND TO MG-GDP
Solved by: X-RAY, Resolution: 1.49A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2quzA 61%
[Model]

3ddc: CRYSTAL STRUCTURE OF NORE1A IN COMPLEX WITH RAS
Solved by: X-RAY, Resolution: 1.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3ddcA 61%
[Model]

3kkn: CRYSTAL STRUCTURE OF H-RAS T35S IN COMPLEX WITH GPPNHP
Solved by: X-RAY, Resolution: 2.09A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3kknA 61%
[Model]

721p: THREE-DIMENSIONAL STRUCTURES OF H-RAS P21 MUTANTS: MOLECULAR BASIS FOR THEIR INABILITY TO FUNCTION AS SIGNALSWITCH MOLECULES
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 721pA 61%
[Model]

2rgd: CRYSTAL STRUCTURE OF H-RASQ61L-GPPNHP
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2rgdA 61%
[Model]

3rs2: H-RAS SOAKED IN 50% 2,2,2-TRIFLUOROETHANOL: ONE OF 10 IN M
Solved by: X-RAY, Resolution: 1.84A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3rs2A 61%
[Model]

1jah: H-RAS P21 PROTEIN MUTANT G12P, COMPLEXED WITH GUANOSINE-5'[BETA,GAMMA-METHYLENE] TRIPHOSPHATE AND MAGNESIUM
Solved by: X-RAY, Resolution: 1.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1jahA 61%
[Model]

1p2s: H-RAS 166 IN 50% 2,2,2 TRIFLOUROETHANOL
Solved by: X-RAY, Resolution: 2.45A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1p2sA 61%
[Model]

1qra: STRUCTURE OF P21RAS IN COMPLEX WITH GTP AT 100 K
Solved by: X-RAY, Resolution: 1.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1qraA 61%
[Model]

2rgc: CRYSTAL STRUCTURE OF H-RASQ61V-GPPNHP
Solved by: X-RAY, Resolution: 1.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2rgcA 61%
[Model]

4dlu: H-RAS SET 1 CA(OAC)2 'ON'
Solved by: X-RAY, Resolution: 1.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 4dluA 61%
[Model]

2rgb: CRYSTAL STRUCTURE OF H-RASQ61K-GPPNHP
Solved by: X-RAY, Resolution: 1.35A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2rgbA 61%
[Model]

4dlr: H-RAS SET 1 PEG 400/CA(OAC)2 'OFF'
Solved by: X-RAY, Resolution: 1.32A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 4dlrA 61%
[Model]

4dlz: H-RAS SET 2 CA(OAC)2/DTE 'OFF'
Solved by: X-RAY, Resolution: 1.66A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 4dlzA 61%
[Model]

1gnr: X-RAY CRYSTAL STRUCTURE ANALYSIS OF THE CATALYTIC DOMAIN OTHE ONCOGENE PRODUCT P21H-RAS COMPLEXED WITH CAGED GTP ANMANT DGPPNHP
Solved by: X-RAY, Resolution: 1.85A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1gnrA 61%
[Model]

221p: THREE-DIMENSIONAL STRUCTURES OF H-RAS P21 MUTANTS: MOLECULAR BASIS FOR THEIR INABILITY TO FUNCTION AS SIGNALSWITCH MOLECULES
Solved by: X-RAY, Resolution: 2.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 221pA 61%
[Model]

1lfd: CRYSTAL STRUCTURE OF THE ACTIVE RAS PROTEIN COMPLEXED WITHTHE RAS-INTERACTING DOMAIN OF RALGDS
Solved by: X-RAY, Resolution: 2.10A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-170 1lfdB 61%
[Model]
3-170 1lfdD 61%
[Model]

1crp: THE SOLUTION STRUCTURE AND DYNAMICS OF RAS P21. GDP DETERMINED BY HETERONUCLEAR THREE AND FOUR DIMENSIONAL NMSPECTROSCOPY
Solved by: NMR, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1crpA 61%
[Model]

1bkd: COMPLEX OF HUMAN H-RAS WITH HUMAN SOS-1
Solved by: X-RAY, Resolution: 2.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1bkdR 61%
[Model]

1xd2: CRYSTAL STRUCTURE OF A TERNARY RAS:SOS:RAS*GDP COMPLEX
Solved by: X-RAY, Resolution: 2.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1xd2B 61%
[Model]
3-168 1xd2A 61%
[Model]

1gnq: X-RAY CRYSTAL STRUCTURE ANALYSIS OF THE CATALYTIC DOMAIN OTHE ONCOGENE PRODUCT P21H-RAS COMPLEXED WITH CAGED GTP ANMANT DGPPNHP
Solved by: X-RAY, Resolution: 2.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1gnqA 61%
[Model]

4dls: H-RAS SET 1 CACL2 'MIXED'
Solved by: X-RAY, Resolution: 1.82A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 4dlsA 61%
[Model]

3oiw: H-RASG12V WITH ALLOSTERIC SWITCH IN THE "ON" STATE
Solved by: X-RAY, Resolution: 1.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3oiwA 61%
[Model]

3oiu: H-RASQ61L WITH ALLOSTERIC SWITCH IN THE "ON" STATE
Solved by: X-RAY, Resolution: 1.32A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3oiuA 61%
[Model]

1wq1: RAS-RASGAP COMPLEX
Solved by: X-RAY, Resolution: 2.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1wq1R 61%
[Model]

5p21: REFINED CRYSTAL STRUCTURE OF THE TRIPHOSPHATE CONFORMATIONOF H-RAS P21 AT 1.35 ANGSTROMS RESOLUTION: IMPLICATIONS FOR THE MECHANISM OF GTP HYDROLYSIS
Solved by: X-RAY, Resolution: 1.35A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 5p21A 61%
[Model]

3rs3: H-RAS SOAKED IN NEAT HEXANE: 1 OF 10 IN MSCS SET
Solved by: X-RAY, Resolution: 1.52A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3rs3A 61%
[Model]

3k8y: ALLOSTERIC MODULATION OF H-RAS GTPASE
Solved by: X-RAY, Resolution: 1.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3k8yA 61%
[Model]

3rso: H-RAS SOAKED IN 20% S,R,S-BISFURANOL: 1 OF 10 IN MSCS SET
Solved by: X-RAY, Resolution: 1.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3rsoA 61%
[Model]

2rga: CRYSTAL STRUCTURE OF H-RASQ61I-GPPNHP
Solved by: X-RAY, Resolution: 1.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2rgaA 61%
[Model]

3l8y: COMPLEX OF RAS WITH CYCLEN
Solved by: X-RAY, Resolution: 2.02A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3l8yA 61%
[Model]

3rrz: H-RAS IN 70% GLYCEROL: ONE OF 10 IN MSCS SET
Solved by: X-RAY, Resolution: 1.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3rrzA 61%
[Model]

4dlw: H-RAS SET 2 CA(OAC)2 'ON'
Solved by: X-RAY, Resolution: 1.72A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 4dlwA 61%
[Model]

4dlx: H-RAS SET 1 CACL2/DTE 'OFF'
Solved by: X-RAY, Resolution: 1.73A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 4dlxA 61%
[Model]

3lbh: RAS SOAKED IN CALCIUM ACETATE
Solved by: X-RAY, Resolution: 1.85A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3lbhA 61%
[Model]

4dlt: H-RAS SET 2 CA(OAC)2 'ON'
Solved by: X-RAY, Resolution: 1.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 4dltA 61%
[Model]

4dso: SMALL-MOLECULE LIGANDS BIND TO A DISTINCT POCKET IN RAS ANSOS-MEDIATED NUCLEOTIDE EXCHANGE ACTIVITY
Solved by: X-RAY, Resolution: 1.85A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-170 4dsoA 61%
[Model]

621p: THREE-DIMENSIONAL STRUCTURES OF H-RAS P21 MUTANTS: MOLECULAR BASIS FOR THEIR INABILITY TO FUNCTION AS SIGNALSWITCH MOLECULES
Solved by: X-RAY, Resolution: 2.40A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 621pA 61%
[Model]

1zw6: CRYSTAL STRUCTURE OF THE GTP-BOUND FORM OF RASQ61G
Solved by: X-RAY, Resolution: 1.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1zw6A 61%
[Model]

3rry: H-RAS CROSSLINKED CONTROL, SOAKED IN AQUEOUS SOLUTION: ONEMSCS SET
Solved by: X-RAY, Resolution: 1.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3rryA 61%
[Model]

1nvx: STRUCTURAL EVIDENCE FOR FEEDBACK ACTIVATION BY RASGTP OF THE RAS-SPECIFIC NUCLEOTIDE EXCHANGE FACTOR SOS
Solved by: X-RAY, Resolution: 3.20A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1nvxR 61%
[Model]
3-168 1nvxQ 61%
[Model]

821p: THREE-DIMENSIONAL STRUCTURES AND PROPERTIES OF A TRANSFORMING AND A NONTRANSFORMING GLYCINE-12 MUTANT OF P21H-RAS
Solved by: X-RAY, Resolution: 1.50A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 821pA 61%
[Model]

1gnp: X-RAY CRYSTAL STRUCTURE ANALYSIS OF THE CATALYTIC DOMAIN OTHE ONCOGENE PRODUCT P21H-RAS COMPLEXED WITH CAGED GTP ANMANT DGPPNHP
Solved by: X-RAY, Resolution: 2.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1gnpA 61%
[Model]

2cl6: CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH S-CAGED GTP
Solved by: X-RAY, Resolution: 1.24A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2cl6X 60%
[Model]

2ce2: CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GDP
Solved by: X-RAY, Resolution: 1.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2ce2X 60%
[Model]

4epy: DISCOVERY OF SMALL MOLECULES THAT BIND TO K-RAS AND INHIBIMEDIATED ACTIVATION
Solved by: X-RAY, Resolution: 1.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-170 4epyA 60%
[Model]

1p2u: H-RAS IN 50% ISOPROPANOL
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1p2uA 60%
[Model]

1p2t: H-RAS 166 IN AQUEOUS MOTHER LIQOUR, RT
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1p2tA 60%
[Model]

1xcm: CRYSTAL STRUCTURE OF THE GPPNHP-BOUND H-RAS G60A MUTANT
Solved by: X-RAY, Resolution: 1.84A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-170 1xcmA 60%
[Model]

2cl0: CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GPPNHP
Solved by: X-RAY, Resolution: 1.80A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2cl0X 60%
[Model]

1q21: CRYSTAL STRUCTURES AT 2.2 ANGSTROMS RESOLUTION OF THE CATALYTIC DOMAINS OF NORMAL RAS PROTEIN AND AN ONCOGENIC MUTANT COMPLEXED WITH GSP
Solved by: X-RAY, Resolution: 2.20A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-171 1q21A 60%
[Model]

521p: THREE-DIMENSIONAL STRUCTURES OF H-RAS P21 MUTANTS: MOLECULAR BASIS FOR THEIR INABILITY TO FUNCTION AS SIGNALSWITCH MOLECULES
Solved by: X-RAY, Resolution: 2.60A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 521pA 60%
[Model]

6q21: MOLECULAR SWITCH FOR SIGNAL TRANSDUCTION: STRUCTURAL DIFFERENCES BETWEEN ACTIVE AND INACTIVE FORMS OF PROTOONCOGENIC RAS PROTEINS
Solved by: X-RAY, Resolution: 1.95A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-171 6q21A 60%
[Model]
3-171 6q21B 60%
[Model]
3-171 6q21C 60%
[Model]
3-171 6q21D 60%
[Model]

4epx: DISCOVERY OF SMALL MOLECULES THAT BIND TO K-RAS AND INHIBIMEDIATED ACTIVATION
Solved by: X-RAY, Resolution: 1.76A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-170 4epxA 60%
[Model]

1aa9: HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE
Solved by: NMR, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-171 1aa9A 60%
[Model]

3gft: HUMAN K-RAS IN COMPLEX WITH A GTP ANALOGUE
Solved by: X-RAY, Resolution: 2.27A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-170 3gftA 60%
[Model]

3rs4: H-RAS SOAKED IN 60% 1,6-HEXANEDIOL: 1 OF 10 IN MSCS SET
Solved by: X-RAY, Resolution: 1.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3rs4A 60%
[Model]

2clc: CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GTP (2)
Solved by: X-RAY, Resolution: 1.30A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2clcX 60%
[Model]

4epw: DISCOVERY OF SMALL MOLECULES THAT BIND TO K-RAS AND INHIBIMEDIATED ACTIVATION
Solved by: X-RAY, Resolution: 1.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-170 4epwA 60%
[Model]

2cld: CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GDP (2)
Solved by: X-RAY, Resolution: 1.22A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2cldX 60%
[Model]

2cl7: CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GTP
Solved by: X-RAY, Resolution: 1.25A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2cl7X 60%
[Model]

4epv: DISCOVERY OF SMALL MOLECULES THAT BIND TO K-RAS AND INHIBIMEDIATED ACTIVATION
Solved by: X-RAY, Resolution: 1.35A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-170 4epvA 60%
[Model]

1xj0: CRYSTAL STRUCTURE OF THE GDP-BOUND FORM OF THE RASG60A MUTANT
Solved by: X-RAY, Resolution: 1.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 1xj0A 60%
[Model]

3k9n: ALLOSTERIC MODULATION OF H-RAS GTPASE
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3k9nA 60%
[Model]

2q21: CRYSTAL STRUCTURES AT 2.2 ANGSTROMS RESOLUTION OF THE CATALYTIC DOMAINS OF NORMAL RAS PROTEIN AND AN ONCOGENIC MUTANT COMPLEXED WITH GSP
Solved by: X-RAY, Resolution: 2.20A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-171 2q21A 60%
[Model]

2evw: CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH R-CAGED GTP
Solved by: X-RAY, Resolution: 1.05A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 2evwX 60%
[Model]

4q21: MOLECULAR SWITCH FOR SIGNAL TRANSDUCTION: STRUCTURAL DIFFERENCES BETWEEN ACTIVE AND INACTIVE FORMS OF PROTOONCOGENIC RAS PROTEINS
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-171 4q21A 60%
[Model]

3rs7: H-RAS SOAKED IN 50% ISOPROPANOL: 1 OF 10 IN MSCS SET
Solved by: X-RAY, Resolution: 1.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 3rs7A 60%
[Model]

4epr: CRYSTAL STRUCTURE OF KRAS-GDP (G12D)
Solved by: X-RAY, Resolution: 2.00A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-168 4eprA 60%
[Model]

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Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.