SWISS-MODEL Repository - Model Details

Model Overview
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Sequence
UniProt P08045
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
zf-C2H2
zf-C2H2
zf-C2H2
zf-C2H2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2
zf-H2C2_2

Model 3D Structure
Model information:
Modelled residue range: 1158 to 1274
Based on template: [ 2dlq ]  
Sequence Identity [%]: 38%
Model date: 2008-09-03
Revision date: 2008-09-03

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-03. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1158     HTGEQPY TCKECGKSFS QSSALVKHVR IHTGEKPYPC STCGKSFIQK
2dlqA     1     g--ssgssgv ecptchkkfl skyylkvhnr khtgekpfec pkcgkcyfrk
                                                                      
TARGET                   s ss    sss    hhhhhhhh hh     sss     sss  h
2dlqA                    s ss    sss    hhhhhhhh hh     sss     sss  h


TARGET    1205  SDLAKH---Q RIHTGEKPYT CTVCGKKFID RSSVVKHSRT HTGERPYKCN
2dlqA     49    enllehearn cmnrseqvft csvcqetfrr rmelrlhmvs htgempykcs
                                                                      
TARGET          hhhhh              ss s    sss    hhhhhhhhh h     sss 
2dlqA           hhhhhhhhh          ss s    sss    hhhhhhhhh h     sss 


TARGET    1252  ECTKGFVQKS DLVK-HMRTH TGEK -                          
2dlqA     99    scsqqfmqkk dlqshmiklh sgpssg                          
                                                                      
TARGET             sss   h hh    hhhh                                 
2dlqA              sss   h hhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 007cef8241b178b393eafaad776686c7 on BC2-cluster at Wed Sep  3 16:35:55 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  15 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>007cef8241b178b393eafaad776686c7
********************************************************************************
>1meyF Evalue:4.80592e-18 SeqID:67.073 Method:BLAST Type:MODEL
--------------------------------------------------------------------*****-------
>1meyF Evalue:1.43375e-17 SeqID:62.195 Method:BLAST Type:MODEL
-----------------------------------------------*****----------------------------
>1meyF Evalue:1.81107e-17 SeqID:62.195 Method:BLAST Type:MODEL
----------------------*****-----------------------------------------------------
>1meyF Evalue:1.82625e-17 SeqID:63.415 Method:BLAST Type:MODEL
------------------------------------*****---------------------------------------
>1meyF Evalue:2.44561e-17 SeqID:62.195 Method:BLAST Type:MODEL
-----------*****----------------------------------------------------------------
>1x6eA Evalue:1.0463e-10 SeqID:63.636 Method:BLAST Type:MODEL
-------------------------------***----------------------------------------------
>1meyF Evalue:1.58474e-17 SeqID:63.415 Method:BLAST Type:MODEL
----------------------------------------------****------------------------------
>1meyF Evalue:2.03548e-17 SeqID:62.195 Method:BLAST Type:MODEL
-------------------------------------------------*****--------------------------
>1meyF Evalue:2.86574e-17 SeqID:60.976 Method:BLAST Type:MODEL
--------------------------------------****--------------------------------------
>1meyF Evalue:6.38419e-17 SeqID:62.195 Method:BLAST Type:MODEL
---------------------****-------------------------------------------------------
>1meyF Evalue:1.08898e-16 SeqID:62.195 Method:BLAST Type:MODEL
----------------------------------------------------------------------*****-----
>1meyF Evalue:1.2979e-15 SeqID:62.500 Method:BLAST Type:MODEL
--------------------------------------------*****-------------------------------
>1meyF Evalue:3.16936e-15 SeqID:62.500 Method:BLAST Type:MODEL
------------------------------------------------------------------------****----
>1x6eA Evalue:1.79915e-11 SeqID:60.000 Method:BLAST Type:MODEL
---------****-------------------------------------------------------------------
>2cotA Evalue:2.9452e-09 SeqID:60.714 Method:BLAST Type:MODEL
---------------------------------***--------------------------------------------
>1znfA Evalue:1.8E-13 SeqID:96.154 Method:HHSEARCH Type:MODEL
-------------------------------------------------------------**-----------------
>2gliA Evalue:1.5E-29 SeqID:37.908 Method:HHSEARCH Type:MODEL
----------------------------------------------********--------------------------
>2dlqA Evalue:5.3E-28 SeqID:38.843 Method:HHSEARCH Type:MODEL
--------------------------------------------------------------------*******-----
>2jp9A Evalue:8.3E-26 SeqID:39.316 Method:HHSEARCH Type:MODEL
----------------------*******---------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1meyF          1161           1242           BLAST          BUILT          
1meyF          803            884            BLAST          BUILT          
1meyF          379            460            BLAST          BUILT          
1meyF          612            693            BLAST          BUILT          
1meyF          189            270            BLAST          BUILT          
1x6eA          528            582            BLAST          BUILT          
1meyF          775            856            BLAST          BUILT          
1meyF          831            912            BLAST          BUILT          
1meyF          640            721            BLAST          BUILT          
1meyF          351            432            BLAST          BUILT          
1meyF          1189           1270           BLAST          BUILT          
1meyF          749            828            BLAST          BUILT          
1meyF          1217           1296           BLAST          BUILT          
1x6eA          161            215            BLAST          BUILT          
2cotA          559            614            BLAST          BUILT          
1znfA          1044           1069           HHSEARCH       NOT BUILT      
2gliA          775            912            HHSEARCH       BUILT          
2dlqA          1158           1274           HHSEARCH       BUILT          
2jp9A          378            488            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 007cef8241b178b393eafaad776686c7 on gopt-26.cluster.bc2.ch BC2-Cluster at
Wed Sep  3 16:51:30 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.