SWISS-MODEL Repository - Model Details

Model Overview
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1
36

Sequence
UniProt P0C371
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
PSI_8

Model 3D Structure
Model information:
Modelled residue range: 4 to 32
Based on template: [ 2o01 ]  
Sequence Identity [%]: 79%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    4        FNLPSIF VPLVGLVFPA IAMASLFLYV QK                   
2o01I     1     m--inlpslf vplvgllfpa vamaslflhv ek-                  
                                                                      
TARGET                  hh    hhhhhhh h   h                           
2o01I                  hhh h     hhhh h   h

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 3f76b50d9b618967efe35822975aa3d8 on BC2-cluster at Sun Aug 31 08:15:53 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>3f76b50d9b618967efe35822975aa3d8
************************************
>2o01I Evalue:9.4E-15 SeqID:79.310 Method:HHSEARCH Type:MODEL
---*****************************----


TEMPLATE ID    START          STOP           METHOD         STATUS         
2o01I          4              32             HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 3f76b50d9b618967efe35822975aa3d8 on gopt-61.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 08:16:22 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.