SWISS-MODEL Repository - Model Details

Model Overview
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1
320

Sequence
UniProt P0C387
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Apocytochr_F_C

Model 3D Structure
Model information:
Modelled residue range: 36 to 285
Based on template: [ 1hcz ]  
Sequence Identity [%]: 90%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    36      YPIFAQQG YENPREATGR IVCANCHLAN KPVDIEVPQA VLPDTVFEAV
1hczA     1       ypifaqqn yenpreatgr ivcanchlas kpvdievpqa vlpdtvfeav
                                                                      
TARGET              hhhhhh              hh          sss  ss s  sssssss
1hczA               hhhhhh              hh          sss  ss s  sssssss


TARGET    84    LRIPYDMQLK QVLANGKKGG LNVGAVLILP EGFELAPPDR ISPELKEKIG
1hczA     49    vkipydmqlk qvlangkkga lnvgavlilp egfelappdr ispemkekig
                                                                      
TARGET          sss        sss   sss  sssssssss     sss       hhhhhhh 
1hczA           sss        sss   sss  sssssssss     sss       hhhhhhh 


TARGET    134   NLSFQSYRPN KKNILVIGPV PGKKYSEIVF PILSPDPAMK KDVHFLKYPI
1hczA     99    nlsfqnyrpn kknilvigpv pgqkyseitf pilapdpatn kdvhflkypi
                                                                      
TARGET              sss      sssss  s ss   sssss sssss           sssss
1hczA               sss      sssss  s ss   sssss sssss           sssss


TARGET    184   YVGGNRGRGQ IYPDGSKSNN TVYNATSTGV VRKILRKEKG GYEISIVDAS
1hczA     149   yvggnrgrgq iypdgsksnn tvynataggi iskilrkekg gyeitivdas
                                                                      
TARGET          sssssss  s ss   sss     sss   ss sssssss    sssssssss 
1hczA           sssssss  s ss   sss     sss   ss sssssss    sssssssss 


TARGET    234   DGRQVIDLIP PGPELLVSEG ESIKLDQPLT SNPNVGGFGQ GDAEIVLQDP
1hczA     199   nerqvidiip rglellvseg esikldqplt snpnvggfgq gdaeivlqdp
                                                                      
TARGET           ssssssss     sss     sss   ssss s     ssss ssssssss  
1hczA            ssssssss     sss     sss   ssss s     ssss ssssssss  


TARGET    284   LR                                                    
1hczA     249   lr-                                                   
                                                                      
TARGET                                                                
1hczA

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 6f9292d8062234d646d9dddd847d1f2d on BC2-cluster at Sat Aug 30 01:45:11 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  2 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>6f9292d8062234d646d9dddd847d1f2d
********************************************************************************
>1hczA Evalue:3.67689e-127 SeqID:90.800 Method:BLAST Type:MODEL
---------**************************************************************---------
>1q90A Evalue:4.90852e-109 SeqID:71.080 Method:BLAST Type:MODEL
---------***********************************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1hczA          36             285            BLAST          BUILT          
1q90A          36             320            BLAST          BUILT          

FINISHED PIPELINE ON ID: 6f9292d8062234d646d9dddd847d1f2d on gopt-62.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 01:45:44 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.