SWISS-MODEL Repository - Model Details

Model Overview
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1
320

Sequence
UniProt P0C387
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Apocytochr_F_C

Model 3D Structure
Model information:
Modelled residue range: 36 to 320
Based on template: [ 1q90 ]  
Sequence Identity [%]: 71%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    36      YPIFAQQG YENPREATGR IVCANCHLAN KPVDIEVPQA VLPDTVFEAV
1q90A     1       ypvfaqqn yanpreangr ivcanchlaq kaveievpqa vlpdtvfeav
                                                                      
TARGET             hhhhhh               hh          sss  ss s  sssssss
1q90A              hhhhhh               hh          sss  ss s  sssssss


TARGET    84    LRIPYDMQLK QVLANGKKGG LNVGAVLILP EGFELAPPDR ISPELKEKIG
1q90A     49    ielpydkqvk qvlangkkgd lnvgmvlilp egfelappdr vpaeikekvg
                                                                      
TARGET          sss        sss   sss  sssssssss     sss       hhhhhhh 
1q90A           sss        sss   sss  sssssssss     sss       hhhhhhh 


TARGET    134   NLSFQSYRPN KKNILVIGPV PGKKYSEIVF PILSPDPAMK KDVHFLKYPI
1q90A     99    nlyyqpyspe qknilvvgpv pgkkysemvv pilspdpakn knvsylkypi
                                                                      
TARGET              sss      sssss  s ss   sssss sssss           sssss
1q90A               sss      sssss  s ss   sssss sssss           sssss


TARGET    184   YVGGNRGRGQ IYPDGSKSNN TVYNATSTGV VRK--ILRKE KGGYEISIVD
1q90A     149   yfggnrgrgq vypdgkksnn tiynasaagk ivaitalsek kggfevsi-e
                                                                      
TARGET          sssssss  s ss   sss     sss  sss ss            sssssss
1q90A           sssssss                 sss   ss ssssssss    sssssss s


TARGET    232   ASDGRQVIDL IPPGPELLVS EGESIKLDQP LTSNPNVGGF GQGDAEIVLQ
1q90A     198   kangevvvdk ipagpdlivk egqtvqadqp ltnnpnvggf gqaeteivlq
                                                                      
TARGET          s   ssssss s    sss     sss   ss sss     ss ssssssssss
1q90A           s   ssssss s    sss     sss   ss sss     ss ssssssssss


TARGET    282   DPLRVQGLLF FFASVILAQV FLVLKKKQFE KVQLYEMNF  -----     
1q90A     248   npariqgllv ffsfvlltqv llvlkkkqfe kvqlaemnfh hhhhh     
                                                                      
TARGET            hhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhh               
1q90A             hhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhh   h hh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 6f9292d8062234d646d9dddd847d1f2d on BC2-cluster at Sat Aug 30 01:45:11 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  2 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>6f9292d8062234d646d9dddd847d1f2d
********************************************************************************
>1hczA Evalue:3.67689e-127 SeqID:90.800 Method:BLAST Type:MODEL
---------**************************************************************---------
>1q90A Evalue:4.90852e-109 SeqID:71.080 Method:BLAST Type:MODEL
---------***********************************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1hczA          36             285            BLAST          BUILT          
1q90A          36             320            BLAST          BUILT          

FINISHED PIPELINE ON ID: 6f9292d8062234d646d9dddd847d1f2d on gopt-62.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 01:45:44 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.