SWISS-MODEL Repository - Model Details

Model Overview
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1
370

Sequence
UniProt P0C796
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
BDV_P40

Model 3D Structure
Model information:
Modelled residue range: 28 to 370
Based on template: [ 1n93 ]  
Sequence Identity [%]: 97%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    28      KLPGKFLQ YTVGGSDPHP GIGHEKDIRQ NAVALLDQSR RDMFHTVTPS
1n93X     28      klpgkflq ytvggsdphp gighekdirq navalldqsr rdmfhtvtps
                                                                      
TARGET                                        hh hhh   hhhh hhsss hhhh
1n93X                                         hh hhh   hhhh hhsss hhhh


TARGET    76    LVFLCLLIPG LHAAFVHGGV PRESYLSTPV TRGEQTVVKT AKFYGEKTTQ
1n93X     76    lvflcllipg lhaafvhggv presylstpv trgeqtvvkt akfygekttq
                                                                      
TARGET          hhhhhhh    hhhhhhhh      ssss           sss           
1n93X           hhhhhhh     hhhhhhh      ssss           sss           


TARGET    126   RDLTELEISS IFSHCCSLLI GVVIGSSSKI KAGAEQIKKR FKTMMAALNR
1n93X     126   rdlteleiss ifshccslli gvvigssski kagaeqikkr fktmmaalnr
                                                                      
TARGET              hhhhhh hhhhhhhhhh hhhh   hhh h   hhhhhh hhhhhhh   
1n93X               hhhhhh hhhhhhhhhh hhhh   hhh h   hhhhhh hhhhhhhh  


TARGET    176   PSHGETATLL QMFNPHEAID WINGQPWVGS FVLSLLTTDF ESPGKEFMDQ
1n93X     176   pshgetatll qmfnpheaid wingqpwvgs fvlsllttdf espgkefmdq
                                                                      
TARGET           hhhhh          hhhhh hhh   hhhh hhhhhh        hhhhhhh
1n93X            hhhhh          hhhhh hhh   hhhh hhhhhh        hhhhhhh


TARGET    226   IKLVASYAQM TTYTTIKEYL AECMDATLTI PVVAYEIRDF LEVSAKLKEE
1n93X     226   iklvasyaqm ttyttikeyl aecmdatlti pvvayeirdf levsaklked
                                                                      
TARGET          hhhhh      hhhhhhhhhh h  sssh    hhhhhhhhhh hhhhhhhhhh
1n93X           hhhhh      hhhhhhhhhh h  sssh    hhhhhhhhhh hhhhhhhhhh


TARGET    276   HADLFPFLGA IRHPDAIKLA PRSFPNLASA AFYWSKKENP TMAGYRASTI
1n93X     276   hadlfpflga irhpdaikla prsfpnlasa afywskken- -------sti
                                                                      
TARGET             hh   hh h   hhh        hhhhhh hhhhhhhh             
1n93X              h   hhh h   hhh        hhhhhh hhhhhhhh             


TARGET    326   QPGASVKETQ LARYRRREIS RGEDGAELSG EISAIMRMIG VTGLN     
1n93X     326   qpgasvketq laryrrreis rgedgaelsg eisaimkmig vtgln-    
                                                                      
TARGET                 hhh hhhhh sss           h hhhhhhh              
1n93X                  hhh hhhhh sss           h hhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 4824ff882790b513835ee5d8157d2522 on BC2-cluster at Sun Aug 31 00:10:27 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>4824ff882790b513835ee5d8157d2522
**************************************************************************
>1n93X Evalue:0 SeqID:97.085 Method:BLAST Type:MODEL
-----**********************************************************-**********


TEMPLATE ID    START          STOP           METHOD         STATUS         
1n93X          28             370            BLAST          BUILT          

FINISHED PIPELINE ON ID: 4824ff882790b513835ee5d8157d2522 on gopt-36.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 00:11:19 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.