SWISS-MODEL Repository - Model Details

Model Overview
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1
154

Sequence
UniProt P10168
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
IL7

Model 3D Structure
Model information:
Modelled residue range: 32 to 150
Based on template: [ 3di3 ]  
Sequence Identity [%]: 65%
Model date: 2013-02-23
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (3di3): HETERO DIMER
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1       KEGKAYES VLMISIDEL- DKMTGTDSNC PNNEPNFFRK HVCDDTKEAA
3di3A     7       kdgkqyes vlmvsidqll dsmkeigsnc lnnefnffkr hicdankegm
                                                                      
TARGET                hhh    hhhhhh                    hhhh         hh
3di3A                 hhh    hhhhhhhh h                hhhh         hh


TARGET    48    FLNRAARKLK QFLKMNISEE FNVHLLTVSQ GTQTLVNCTS KEEKNVKEQK
3di3A     55    flfraarklr qflkmnstgd fdlhllkvse gttillnctg q----vkgqk
                                                                      
TARGET          hhhhhhhhhh          h hhhhhhhhhh hhhhhhhhh            
3di3A           hhhhhhhh            h hhhhhhhhhh hhh   h              


TARGET    98    KNDAC-FLKR LLREIKTCWN KIL                             
3di3A     124   klndlcflkr llqeiktcwn kilm                            
                                                                      
TARGET                  hh hhhhhhhhhh hhh                             
3di3A               hhhhhh hhhhhhhhhh hhh

Quality 


Template's ligands section 
Template without ligands. 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 3di3 is annotated as HETERO DIMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 3di3.pdb1.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 3di3_1

Template Selection 
 - Start SMR-Pipeline for:9688a45d1d784e1839c7fd836ade7ace on BC2-cluster at Sat Feb 23 02:33:41
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1 go for
modeling ...

FATAL - No A3m found

 - No template with B found
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                  **************************************************************
 - building model based on 3di3A (32-150) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:9688a45d1d784e1839c7fd836ade7ace on BC2-cluster at Sat Feb 23 02:34:13
2013


Template Description
Match Chain SeqId

3di3: CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN INTERLEUKIN-7 WITH GLYCOSYLATED HUMAN INTERLEUKIN-7 RECEPTOR ALPHA ECTODOMAIN
Solved by: X-RAY, Resolution: 2.90A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

32-150 3di3A 65%
[Model]

3di2: CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN INTERLEUKIN-7 WITH UNGLYCOSYLATED HUMAN INTERLEUKIN-7 RECEPTOR ALPHA ECTODOMAIN
Solved by: X-RAY, Resolution: 2.70A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

33-153 3di2A 60%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.