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1
853

Sequence
UniProt P10383
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
P10383: 7227.FBpp0071181

Domain
Link to: [ InterPro ]
OTU

Model 3D Structure
Model information:
Modelled residue range: 25 to 149
Based on template: [ 3tmp ]  
Sequence Identity [%]: 29%
Model date: 2013-02-22
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (3tmp): HETERO DIMER
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: ALA: 1.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1                                                    ESRGLYR
3tmpE     168   gshmgagynx edeyeaaaar ieamdpatve qqehwfekal r--dkkgfii
                                                                      
TARGET                                                              ss
3tmpE                       hhhhhhhh       hhhhh hhhhhhhhhh h  hh   ss


TARGET    8     KHTARDASSL FRVIAEQMYD TQMLHYEIRL ECVRFMTLKR RIFEKEIPGD
3tmpE     216   kqmkedgacl fravadqvyg dqdmhevvrk hcmdylmkna dyfsnyvted
                                                                      
TARGET          s       hh hhhhhhhh       hhhhhh hhhhhhh    hhhhh     
3tmpE           s      hhh hhhhhhhh       hhhhhh hhhhhhh    hhhhh     


TARGET    58    FDSYMQDMSK PKTYGTMTEL RAMSCLYRRN VILYEPYNMG TSVVF----N
3tmpE     266   fttyinrkrk nnchgnhiem qamaemynrp vevyq-ystg tsavepintf
                                                                      
TARGET          hhhhhhhh         hhhh hhhhhhh  s ssss                 
3tmpE           hhhhhhhh         hhhh hhhhhhh  s ssss              sss


TARGET    104   RRYAENFRVF FNNENHFDSV YD                              
3tmpE     315   hgidepirvs yhrnihynsv vn-                             
                                                                      
TARGET                ssss ss   sssss s                               
3tmpE                 ssss ss   sssss s

Quality 


Template's ligands section 
Ligands in the template: ALA: 1. 
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page. 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 3tmp is annotated as HETERO DIMER 
 The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry 
 The following biological unit was used to build the template structure: 3tmp.pdb3.gz 
      
 
Quaternary Structure Modelling of the Target Protein 
 3tmp_3

Template Selection 
 - Start SMR-Pipeline for:331632df06f9437c20287862863896a4 on BC2-cluster at Thu Feb 21 23:22:18
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

FATAL - No A3m found

 - Run HHSearch to detect more templates...
FATAL - No templates found in HHSEARCH, strange
 - No template with F found
 - No template with D found
 - No template with B found
 - No template with H found
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:1): model based on new templates
 - Send 1 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -   ************
 - building model based on 3tmpE (25-149) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:331632df06f9437c20287862863896a4 on BC2-cluster at Thu Feb 21 23:23:30
2013

no data available!
Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.